View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4049_low_8 (Length: 426)
Name: NF4049_low_8
Description: NF4049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4049_low_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 172; Significance: 3e-92; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 49 - 267
Target Start/End: Original strand, 26546074 - 26546290
Alignment:
| Q |
49 |
gggctttgtttcataaacattcactaattacgagaaacatataacaccnnnnnnnnttagggataacaaggtagaaacatgagtttcggaaacgttaaaa |
148 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26546074 |
gggctttgtttcagaaacattcactaattacgagaaacata--acaccaaaaaatattagggataacaaggtagaaacatgagtttcggaaacgttaaaa |
26546171 |
T |
|
| Q |
149 |
gtgcatatggagaacaagtggagttgatgtgcgaaagagtagatgaagttttaggtctgagtagtaaagttcgagagagaagacaaagaatcacaatagc |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
26546172 |
gtgcatatggagaacaagtggagttgatgtgcgaaagagtagatgaagttttaggtcttagtagtaaagtttgagagagaagacaaagaatcacaatagc |
26546271 |
T |
|
| Q |
249 |
atactcattagcatacatg |
267 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
26546272 |
atactcattagcatacatg |
26546290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 49 - 231
Target Start/End: Original strand, 26551804 - 26551984
Alignment:
| Q |
49 |
gggctttgtttcataaacattcactaattacgagaaacatataacaccnnnnnnnnttagggataacaaggtagaaacatgagtttcggaaacgttaaaa |
148 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
26551804 |
gggctttgtttcagaaacattgactaattacgagaaacata--acaccaaaaaatattagggataacaaggtagaaacatgagtttccgaaacgttaaaa |
26551901 |
T |
|
| Q |
149 |
gtgcatatggagaacaagtggagttgatgtgcgaaagagtagatgaagttttaggtctgagtagtaaagttcgagagagaaga |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26551902 |
gtgcatatggagaacaagtggagttgatgtgcgaaagagtagatgaagttttaggtctgagtagtaaagttcgagagagaaga |
26551984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 366 - 413
Target Start/End: Original strand, 26546389 - 26546436
Alignment:
| Q |
366 |
cgtcgtggttcaacgttgttcatgttctcgtctaattatgagttcgtt |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
26546389 |
cgtcgtggttcaacgttgttcatgttctcgtttaattatgagttcgtt |
26546436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 228 - 267
Target Start/End: Original strand, 26552257 - 26552296
Alignment:
| Q |
228 |
aagacaaagaatcacaatagcatactcattagcatacatg |
267 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
26552257 |
aagacaaataatcacaatagcatactcattagcatacatg |
26552296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 128 - 235
Target Start/End: Complemental strand, 35037413 - 35037312
Alignment:
| Q |
128 |
tgagtttcggaaacgttaaaagtgcatatggagaacaagtggagttgatgtgcgaaagagtagatgaagttttaggtctgagtagtaaagttcgagagag |
227 |
Q |
| |
|
|||||||| ||||||| |||| | || ||||||||| |||||||||||||||||||||| | |||||||| ||||||| | |||||| |||||| |
|
|
| T |
35037413 |
tgagtttcagaaacgtaaaaatttcagatggagaacgagtggagttgatgtgcgaaaga------ggagttttagatctgagtgatgaagttcaagagag |
35037320 |
T |
|
| Q |
228 |
aagacaaa |
235 |
Q |
| |
|
|||||||| |
|
|
| T |
35037319 |
aagacaaa |
35037312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University