View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4049_low_9 (Length: 399)
Name: NF4049_low_9
Description: NF4049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4049_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 100 - 186
Target Start/End: Original strand, 46306722 - 46306809
Alignment:
| Q |
100 |
tggaaattgatgatattaaagaattgaaacatgcacaaaagataaatttgtgaaacttgtat-aaaaacaatgtctcgttaactgttg |
186 |
Q |
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| T |
46306722 |
tggaaattgatgatattaaagaattgaaacatgcacaaaagataaatttgtgaaacttgtataaaaaacaatgtctcgttaactgttg |
46306809 |
T |
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Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 281 - 377
Target Start/End: Original strand, 46308816 - 46308912
Alignment:
| Q |
281 |
atttactatcaacttgaattgaaaaagcaataaagaaataagtgtcataatcagtttaaaattacatgacaacgcactcactttcacaaaatttctg |
377 |
Q |
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| T |
46308816 |
atttactatcaacttgaattgaaaaagcaataaagaaataagtgtcatgatgagtttaaaattacataacaacacactcactttcacaaaatctctg |
46308912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 221 - 283
Target Start/End: Original strand, 46306899 - 46306961
Alignment:
| Q |
221 |
ttttaaacaaataagaagcaaaagggtgagtttattttaatacggctgaaagaagtgcatatt |
283 |
Q |
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| T |
46306899 |
ttttaaacaaataagaagcaaaagggtgagtttattttcatacggctgaaagaagtacatatt |
46306961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 110 - 166
Target Start/End: Original strand, 46303473 - 46303529
Alignment:
| Q |
110 |
tgatattaaagaattgaaacatgcacaaaagataaatttgtgaaacttgtataaaaa |
166 |
Q |
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| T |
46303473 |
tgatattaaagaattgaaatatgcacaaaagataaatttgtgaaacttgtatcaaaa |
46303529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 285 - 368
Target Start/End: Complemental strand, 46015103 - 46015021
Alignment:
| Q |
285 |
actatcaacttgaattgaaaaagcaataaagaaataagtgtcataatcagtttaaaattacatgacaacgcactcactttcaca |
368 |
Q |
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| T |
46015103 |
actatcaactagaattgaaaaagcaacaaa-aaataaaagtcatgaagagtttaaaattacatgacaagacactcaatttcaca |
46015021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 110 - 166
Target Start/End: Original strand, 46260461 - 46260515
Alignment:
| Q |
110 |
tgatattaaagaattgaaacatgcacaaaagataaatttgtgaaacttgtataaaaa |
166 |
Q |
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| T |
46260461 |
tgatattgaagaattgaaatatgcacaa--gataaatttgtgaaacttgtatcaaaa |
46260515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 112 - 166
Target Start/End: Original strand, 3801355 - 3801409
Alignment:
| Q |
112 |
atattaaagaattgaaacatgcacaaaagataaatttgtgaaacttgtataaaaa |
166 |
Q |
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| T |
3801355 |
atattaaagaattgaaatatgcaaaaaagataaatttgtgaaacttgtatcaaaa |
3801409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 221 - 272
Target Start/End: Original strand, 3801527 - 3801578
Alignment:
| Q |
221 |
ttttaaacaaataagaagcaaaagggtgagtttattttaatacggctgaaag |
272 |
Q |
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| T |
3801527 |
ttttaaacaaataagaagtgaaagggtgaatttcttttaatacagctgaaag |
3801578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 110 - 166
Target Start/End: Complemental strand, 444767 - 444709
Alignment:
| Q |
110 |
tgatattaaagaattgaaacatgcacaaaag--ataaatttgtgaaacttgtataaaaa |
166 |
Q |
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| T |
444767 |
tgatattaaagaattcaaatatgcacacaaacaataaatttgtgaaacttgtataaaaa |
444709 |
T |
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