View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4050_high_14 (Length: 328)

Name: NF4050_high_14
Description: NF4050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4050_high_14
NF4050_high_14
[»] chr4 (3 HSPs)
chr4 (1-291)||(50661051-50661341)
chr4 (120-212)||(50677792-50677884)
chr4 (122-180)||(4899353-4899411)
[»] chr5 (7 HSPs)
chr5 (120-252)||(12792551-12792684)
chr5 (120-252)||(14487292-14487423)
chr5 (120-207)||(12729661-12729749)
chr5 (120-189)||(5909994-5910063)
chr5 (120-252)||(14352068-14352199)
chr5 (204-252)||(16671196-16671244)
chr5 (120-184)||(16670961-16671025)
[»] chr1 (3 HSPs)
chr1 (166-252)||(33031671-33031757)
chr1 (120-186)||(31703216-31703282)
chr1 (67-99)||(33031573-33031605)
[»] chr7 (3 HSPs)
chr7 (176-252)||(41541343-41541419)
chr7 (120-182)||(11779010-11779072)
chr7 (67-103)||(11779085-11779121)
[»] chr6 (3 HSPs)
chr6 (120-199)||(15151196-15151274)
chr6 (67-103)||(15151291-15151327)
chr6 (67-103)||(17299291-17299327)
[»] chr2 (1 HSPs)
chr2 (123-181)||(15764786-15764844)


Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 50661051 - 50661341
Alignment:
Q  1 agtttatcgttgttccaagtcgcactaggttttttaaaagaaaaaattgcctcgattggctggacgcaggggcggatctgaaattgaattattagtgggg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50661051 agtttatcgttgttccaagtcgcactaggttttttaaaagaaaaaattgcctcgattggctggacgcaggggcggatctgaaattgaattattagtgggg 50661150  T
Q  101 ctacaannnnnnnnnnnnaaaggaagtaagactaaaaattttggcaaaataaattacaaaaatagcaacatatgtattaatcataacaaatcatcaatca 200  Q
    ||||||             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  50661151 ctacaatttttttttttttaaggaagtaagactaaaaattttggcaaaataaattacaaaaatagcaacatatgtattaatcataataaatcatcaatca 50661250  T
Q  201 ttcatagataatgcacaacataagttgcaaaatcttaatgtatatttatatagagcgagcacgcacgcaaacggacgcgcgcgcacacaca 291  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||    
T  50661251 ttcatagataatgcacaacgtaagttgcaaaatcttaatgtatatttatatagagcgagcatgcacgcaaacgggcgcgcgcacacacaca 50661341  T

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Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 120 - 212
Target Start/End: Original strand, 50677792 - 50677884
Alignment:
Q  120 aaggaagtaagactaaaaattttggcaaaataaattacaaaaatagcaacatatgtattaatcataacaaatcatcaatcattcatagataat 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||| |||||||||    
T  50677792 aaggaagtaagactaaaaattttggcaaaataaattacaaaaatataaacatatgtattaatcataataaatcatcaatcatttatagataat 50677884  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 122 - 180
Target Start/End: Original strand, 4899353 - 4899411
Alignment:
Q  122 ggaagtaagactaaaaattttggcaaaataaattacaaaaatagcaacatatgtattaa 180  Q
    |||||| ||||||||||||||||| |||||||| ||| |||||  ||||||||||||||    
T  4899353 ggaagtgagactaaaaattttggcgaaataaataacacaaataagaacatatgtattaa 4899411  T

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Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 120 - 252
Target Start/End: Original strand, 12792551 - 12792684
Alignment:
Q  120 aaggaagtaagactaaaaattttggcaaaataaattacaaaaatagcaacatatgtattaatca-taacaaatcatcaatcattcatagataatgcacaa 218  Q
    |||||||||||||||||| ||| ||||||||| |||||||||||| ||||||||||| |||||| ||||||||| ||||| ||| |||||||||  ||||    
T  12792551 aaggaagtaagactaaaagtttgggcaaaatagattacaaaaataacaacatatgtaataatcattaacaaatcgtcaattatttatagataatagacaa 12792650  T
Q  219 cataagttgcaaaatcttaatgtatatttatata 252  Q
      |||| |||||||||||||| ||||||||||||    
T  12792651 ggtaagctgcaaaatcttaatatatatttatata 12792684  T

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Target: chr5; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 120 - 252
Target Start/End: Complemental strand, 14487423 - 14487292
Alignment:
Q  120 aaggaagtaagactaaaaattttggcaaaataaattacaaaaatagcaacatatgtattaatcataacaaatcatcaatcattcatagataatgcacaac 219  Q
    |||||||||||||||||| ||| | | ||||| |||||||||||| |||||| | |||||||||||||||||| ||||||||| ||||||||| |||||     
T  14487423 aaggaagtaagactaaaa-tttggacgaaatagattacaaaaataacaacatgtatattaatcataacaaatcgtcaatcatttatagataatacacaat 14487325  T
Q  220 ataagttgcaaaatcttaatgtatatttatata 252  Q
     |||  | |||||||||||| ||||||||||||    
T  14487324 gtaaactacaaaatcttaatatatatttatata 14487292  T

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Target: chr5; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 120 - 207
Target Start/End: Original strand, 12729661 - 12729749
Alignment:
Q  120 aaggaagtaagactaaaaattttggcaaaataaattacaaaaatagcaacatatgtattaatca-taacaaatcatcaatcattcatag 207  Q
    |||||||||||||||||| ||| ||||||||| |||||||||||| ||||||||||| |||||| ||||||||| ||||| ||| ||||    
T  12729661 aaggaagtaagactaaaagtttgggcaaaatagattacaaaaataacaacatatgtaataatcattaacaaatcgtcaattatttatag 12729749  T

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Target: chr5; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 120 - 189
Target Start/End: Original strand, 5909994 - 5910063
Alignment:
Q  120 aaggaagtaagactaaaaattttggcaaaataaattacaaaaatagcaacatatgtattaatcataacaa 189  Q
    |||||||||||||||||||||||| ||||||||||| || ||||| ||| ||||||||||||| ||||||    
T  5909994 aaggaagtaagactaaaaattttgacaaaataaattgcacaaataacaaaatatgtattaatcgtaacaa 5910063  T

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Target: chr5; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 120 - 252
Target Start/End: Complemental strand, 14352199 - 14352068
Alignment:
Q  120 aaggaagtaagactaaaaattttggcaaaataaattacaaaaatagcaacatatgtattaatcataacaaatcatcaatcattcatagataatgcacaac 219  Q
    |||||||||||||||||| ||| ||| ||||| |||||||||||| |||||||| |||||||||||| ||||  ||| ||||| ||| ||||| ||||||    
T  14352199 aaggaagtaagactaaaa-tttgggcgaaatatattacaaaaataacaacatatatattaatcataataaattgtcactcatttataaataatacacaac 14352101  T
Q  220 ataagttgcaaaatcttaat-gtatatttatata 252  Q
     | ||  |||||||||||||  ||||||||||||    
T  14352100 gt-agccgcaaaatcttaataatatatttatata 14352068  T

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Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 204 - 252
Target Start/End: Original strand, 16671196 - 16671244
Alignment:
Q  204 atagataatgcacaacataagttgcaaaatcttaatgtatatttatata 252  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  16671196 atagataatgcataacataagttgcaaaatcttaatatatatttatata 16671244  T

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Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 120 - 184
Target Start/End: Original strand, 16670961 - 16671025
Alignment:
Q  120 aaggaagtaagactaaaaattttggcaaaataaattacaaaaatagcaacatatgtattaatcat 184  Q
    ||||||||||||||||||| |||||| |||||||||||| |||||  || |||||||| ||||||    
T  16670961 aaggaagtaagactaaaaaatttggcgaaataaattacacaaataataatatatgtatcaatcat 16671025  T

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Target: chr1 (Bit Score: 59; Significance: 6e-25; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 166 - 252
Target Start/End: Original strand, 33031671 - 33031757
Alignment:
Q  166 caacatatgtattaatcataacaaatcatcaatcattcatagataatgcacaacataagttgcaaaatcttaatgtatatttatata 252  Q
    ||||||||||||||||||||| ||||| ||||||||| |||||||||||||| |||||||| |||||||||||| || |||||||||    
T  33031671 caacatatgtattaatcataataaatcgtcaatcatttatagataatgcacaccataagttacaaaatcttaatatacatttatata 33031757  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 120 - 186
Target Start/End: Original strand, 31703216 - 31703282
Alignment:
Q  120 aaggaagtaagactaaaaattttggcaaaataaattacaaaaatagcaacatatgtattaatcataa 186  Q
    |||||||||||||||||  ||||| | ||||| ||||||||||||||||||||  ||||||||||||    
T  31703216 aaggaagtaagactaaattttttgacgaaatagattacaaaaatagcaacatacttattaatcataa 31703282  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 99
Target Start/End: Original strand, 33031573 - 33031605
Alignment:
Q  67 caggggcggatctgaaattgaattattagtggg 99  Q
    ||||||||||||||| |||||||||||||||||    
T  33031573 caggggcggatctgagattgaattattagtggg 33031605  T

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Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 176 - 252
Target Start/End: Original strand, 41541343 - 41541419
Alignment:
Q  176 attaatcataacaaatcatcaatcattcatagataatgcacaacataagttgcaaaatcttaatgtatatttatata 252  Q
    ||||||||||||||||| ||||| ||| |||||||||||| |||||||||  |||||||||||| ||||| ||||||    
T  41541343 attaatcataacaaatcgtcaattatttatagataatgcataacataagtcacaaaatcttaatatatatatatata 41541419  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 182
Target Start/End: Complemental strand, 11779072 - 11779010
Alignment:
Q  120 aaggaagtaagactaaaaattttggcaaaataaattacaaaaatagcaacatatgtattaatc 182  Q
    |||||||||| |||||||| |||| | ||||||||||| |||| |  ||||||||||||||||    
T  11779072 aaggaagtaacactaaaaaatttgtcgaaataaattaccaaaaaaataacatatgtattaatc 11779010  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 103
Target Start/End: Complemental strand, 11779121 - 11779085
Alignment:
Q  67 caggggcggatctgaaattgaattattagtggggcta 103  Q
    |||| |||||||||| |||||||||||||||||||||    
T  11779121 caggagcggatctgagattgaattattagtggggcta 11779085  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 120 - 199
Target Start/End: Complemental strand, 15151274 - 15151196
Alignment:
Q  120 aaggaagtaagactaaaaattttggcaaaataaattacaaaaatagcaacatatgtattaatcataacaaatcatcaatc 199  Q
    |||||||||||||||||| ||||||| ||||||||||| |||| |  || ||||||||||||| ||||||||| ||||||    
T  15151274 aaggaagtaagactaaaa-ttttggcgaaataaattaccaaaaaaataatatatgtattaatcgtaacaaatcttcaatc 15151196  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 103
Target Start/End: Complemental strand, 15151327 - 15151291
Alignment:
Q  67 caggggcggatctgaaattgaattattagtggggcta 103  Q
    ||||||||||||||  |||||||||||||||||||||    
T  15151327 caggggcggatctgggattgaattattagtggggcta 15151291  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 103
Target Start/End: Complemental strand, 17299327 - 17299291
Alignment:
Q  67 caggggcggatctgaaattgaattattagtggggcta 103  Q
    ||||||||||||||| |||||| ||||||||||||||    
T  17299327 caggggcggatctgagattgaactattagtggggcta 17299291  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 181
Target Start/End: Original strand, 15764786 - 15764844
Alignment:
Q  123 gaagtaagactaaaaattttggcaaaataaattacaaaaatagcaacatatgtattaat 181  Q
    ||||||||||||||| |||||||||||||||||| | |||||  ||||| |||||||||    
T  15764786 gaagtaagactaaaatttttggcaaaataaattatacaaataataacatttgtattaat 15764844  T

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