View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4050_high_19 (Length: 290)
Name: NF4050_high_19
Description: NF4050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4050_high_19 |
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Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 45 - 252
Target Start/End: Complemental strand, 48531808 - 48531600
Alignment:
| Q |
45 |
gtaattgtatatgttgggtgtttagttgtacttaaaaagcatgttggtgtgccagattcttggtaacatatgatttgtatcatctaagactttgagcaga |
144 |
Q |
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| T |
48531808 |
gtaattgtatatgttgggtgtttagttgtacttaaaaagcatgttggtgtgccatattcttggtaacaaatgatttgtatcatataagactttgagcaga |
48531709 |
T |
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| Q |
145 |
caaacctgttcacctatcacgtcttgtttgcaagagc-gttgtatttatgagatatgagaagctaagagaaaacaaccttgaatgagattgagaggaagt |
243 |
Q |
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| T |
48531708 |
caaacctgttcacctatcacgtcttgtttgcaagagcatttgtatttatgagatatgagaagctaagagaaaacaaccttgaatgagattgagaggaagt |
48531609 |
T |
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| Q |
244 |
ggtgttggt |
252 |
Q |
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||||||||| |
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| T |
48531608 |
ggtgttggt |
48531600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 45 - 209
Target Start/End: Complemental strand, 48529046 - 48528882
Alignment:
| Q |
45 |
gtaattgtatatgttgggtgtttagttgtacttaaaaagcatgttggtgtgccagattcttggtaacatatgatttgtatcatctaagactttgagcaga |
144 |
Q |
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||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||| |
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| T |
48529046 |
gtaattgtatatgtttggtgtttagttgtatttaaaaagcatgttggtgtgccatattctaggtaacaaatgatttgtatcatctaagactttgagcaga |
48528947 |
T |
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| Q |
145 |
caaacctgttcacctatcacgtcttgtttgcaagagcgttgtatttatgagatatgagaagctaa |
209 |
Q |
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| T |
48528946 |
cagaactgttcacctatcacgtcttgtttgcaagagcattgtatttatgagatatgagaagctaa |
48528882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 48529068 - 48529117
Alignment:
| Q |
1 |
ttgcagtcctttttcaagtcaaacatgtttctgttattggcaaagtaatt |
50 |
Q |
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| T |
48529068 |
ttgcagccctttttcaagtcaaacatgtttttgttattggcaaagtaatt |
48529117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 48531829 - 48531858
Alignment:
| Q |
1 |
ttgcagtcctttttcaagtcaaacatgttt |
30 |
Q |
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| T |
48531829 |
ttgcagtcctttttcaagtcaaacatgttt |
48531858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 207 - 276
Target Start/End: Complemental strand, 5341793 - 5341724
Alignment:
| Q |
207 |
taagagaaaacaaccttgaatgagattgagaggaagtggtgttggtgatgtgagagtgagtgtaagggtt |
276 |
Q |
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| T |
5341793 |
taagagaaaacgaccttgaaagagaatgagaggaagtgatgttggtgatgtgagagtgagtctgagggtt |
5341724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 207 - 268
Target Start/End: Original strand, 38542725 - 38542786
Alignment:
| Q |
207 |
taagagaaaacaaccttgaatgagattgagaggaagtggtgttggtgatgtgagagtgagtg |
268 |
Q |
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| T |
38542725 |
taagagaaaacaactttgaaagaaagtgagaggaaatgatgttggtgatgtgagaatgagtg |
38542786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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