View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4050_high_27 (Length: 247)

Name: NF4050_high_27
Description: NF4050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4050_high_27
NF4050_high_27
[»] chr1 (3 HSPs)
chr1 (140-232)||(6455966-6456058)
chr1 (1-46)||(6455825-6455870)
chr1 (188-232)||(6596424-6596467)


Alignment Details
Target: chr1 (Bit Score: 93; Significance: 2e-45; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 140 - 232
Target Start/End: Original strand, 6455966 - 6456058
Alignment:
Q  140 gattaagagattctatgacaagaagtgtactagtacatagattttgacaaaaaatgcctagggctttttataggtatgtgggtggtcattttt 232  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6455966 gattaagagattctatgacaagaagtgtactagtacatagattttgacaaaaaatgcctagggctttttataggtatgtgggtggtcattttt 6456058  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 6455825 - 6455870
Alignment:
Q  1 gttaacgtataggcacgaatattcacacaaatgctttgtgtttggc 46  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  6455825 gttaacgtataggcacgaatattcacacaaatgctttgtgtttggc 6455870  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 188 - 232
Target Start/End: Complemental strand, 6596467 - 6596424
Alignment:
Q  188 aaaaaatgcctagggctttttataggtatgtgggtggtcattttt 232  Q
    ||||||||||| |||||||||||||||||||||||||||||||||    
T  6596467 aaaaaatgcct-gggctttttataggtatgtgggtggtcattttt 6596424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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