View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4050_high_28 (Length: 246)
Name: NF4050_high_28
Description: NF4050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4050_high_28 |
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| [»] scaffold0049 (1 HSPs) |
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Alignment Details
Target: scaffold0049 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: scaffold0049
Description:
Target: scaffold0049; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 60338 - 60104
Alignment:
| Q |
1 |
cttggtcctgaaagttccattgcttgtgcaagcaaagaagagtcatcagtaagatcagaataacgttctgaagacgagagttcatttcctctacttcgtg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
60338 |
cttggtcctgaaagttccattgcttgtgcaagcaaagaagagtcatcagtaagatcagaataacgttctgaagacgagagttcatttcctctacttcgtg |
60239 |
T |
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| Q |
101 |
ttgattcagctctttgtgacgcttcccatttctctgcaagtccatctccttcaagcattctaactacttctgacatttttggcctgtgacttggaaggta |
200 |
Q |
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| T |
60238 |
ttgattcagctctttgtgacgcttcccatttctctgcaagtccatctccttcaagcattctaactacttctgacatttttggcctgtgacttggaaggta |
60139 |
T |
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| Q |
201 |
ctgagtacataaaagagccacttgaactatttcat |
235 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
60138 |
ctgagtacataaaagagccacttgaactatttcat |
60104 |
T |
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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 233
Target Start/End: Original strand, 5853447 - 5853559
Alignment:
| Q |
121 |
gcttcccatttctctgcaagtccatctccttcaagcattctaactacttctgacatttttggcctgtgacttggaaggtactgagtacataaaagagcca |
220 |
Q |
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||||||||| | || || |||||||| ||||| ||||| | || || || |||||||| || || || |||||||| || ||||||||||| ||||||| |
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| T |
5853447 |
gcttcccatctttcggctagtccatcaccttcgagcatgcgtacaacctcggacattttaggtctatggcttggaagatattgagtacataagagagcca |
5853546 |
T |
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| Q |
221 |
cttgaactatttc |
233 |
Q |
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| T |
5853547 |
cttgaaccatttc |
5853559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 189
Target Start/End: Original strand, 54225330 - 54225394
Alignment:
| Q |
125 |
cccatttctctgcaagtccatctccttcaagcattctaactacttctgacatttttggcctgtga |
189 |
Q |
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|||| ||||| ||||||||||||||||||||||| | || ||||| |||||||| |||| |||| |
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| T |
54225330 |
cccacttctcagcaagtccatctccttcaagcatccggaccacttcggacattttcggccggtga |
54225394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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