View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4050_high_30 (Length: 236)
Name: NF4050_high_30
Description: NF4050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4050_high_30 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 3807843 - 3808063
Alignment:
| Q |
1 |
tccttagcaccttccattgaagctacgtctacacagaaatacaaatacaagaatgcatacgcgacaatgatgtatgtaggaacaccaagagactatgaat |
100 |
Q |
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| T |
3807843 |
tccttagcaccttccattgaagctacgtctacacagaaatacaaatacaagaatgcatacgcgacaatgatgtatgtaggaacaccaagagactatgaat |
3807942 |
T |
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| Q |
101 |
tctacgttgctgttcgtgttcttgttagatcactttcaaaacttaatgttcaagctgatcttgttgttcttgcttccattgatgttcctcttccatggat |
200 |
Q |
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| T |
3807943 |
tctacgttgctgttcgtgttcttgttagatcactttcaaaacttaatgttcaagctgatcttgttgtccttgcttccattgatgttcctcttccatggat |
3808042 |
T |
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| Q |
201 |
tcgagctttgtgagtgattcc |
221 |
Q |
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| T |
3808043 |
tcaagctttgtgagtgattcc |
3808063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 207
Target Start/End: Complemental strand, 41678254 - 41678189
Alignment:
| Q |
142 |
cttaatgttcaagctgatcttgttgttcttgcttccattgatgttcctcttccatggattcgagct |
207 |
Q |
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| T |
41678254 |
cttaatgttcaagccgatcttgttgtcattgcttctgttgatgttcctcttcgttggattcgagct |
41678189 |
T |
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