View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4050_high_31 (Length: 227)
Name: NF4050_high_31
Description: NF4050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4050_high_31 |
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| [»] scaffold0049 (1 HSPs) |
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Alignment Details
Target: scaffold0049 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: scaffold0049
Description:
Target: scaffold0049; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 6 - 227
Target Start/End: Complemental strand, 60624 - 60403
Alignment:
| Q |
6 |
atatttttcatggacaatatcagaagtaaattaagcagagttacaactcaccagtgaaacaaatctgaaaataagatcaatagtttttagtacaaactat |
105 |
Q |
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| T |
60624 |
atatttttcatggacaatatcagaagtaaattaagcagagttacaactcaccagtgaaacaaatctgaaaataagatcaatagtttttagtacaaactat |
60525 |
T |
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| Q |
106 |
ttataaacattattccaacaatccgaaggaccttgaatgaaaccatccctccatagttgatcaaaacacattaccaaacaaacatctatacgtcagtatc |
205 |
Q |
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| T |
60524 |
ttataaacattattccaacaatccgaaggaccttgagtgaaaccatccctccatagttgatcaaaacacattaccaaacaaacatctatacgtcagtgtc |
60425 |
T |
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| Q |
206 |
tccaatcagattctgtacagta |
227 |
Q |
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|||||||||||||||||||||| |
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| T |
60424 |
tccaatcagattctgtacagta |
60403 |
T |
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