View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4050_high_32 (Length: 225)
Name: NF4050_high_32
Description: NF4050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4050_high_32 |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 42881052 - 42880831
Alignment:
| Q |
1 |
agccatgcttttgcataatacaacactatcttgtttgtgcatcatagactaataaacgccttggtttgacggtgaaagaaggattcatgcgttccaacac |
100 |
Q |
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| T |
42881052 |
agccatgcttttgcataatacaacactatcttgtttgtgcatcatagactgataaacgccttggtttgacggtgaaagaaggattcatgcgttccaacac |
42880953 |
T |
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| Q |
101 |
taatttgttgtggttttaacaagctacaaacaataatttctcctcaaaagtaatatttcattacgaaacaaacataccattagtcccagaaagagatgat |
200 |
Q |
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| T |
42880952 |
taatttgttgtggttttaacaagctacaaacaataatttcttctcaaaagtaatatttcattacgaaacaaacataccattagtcccaaaaagagatgat |
42880853 |
T |
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| Q |
201 |
gatcgatgcaaatatttttcat |
222 |
Q |
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| T |
42880852 |
gatcgatgcaaatatttttcat |
42880831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 186
Target Start/End: Complemental strand, 42882593 - 42882428
Alignment:
| Q |
22 |
aacactatcttgtttgtgcatcatagactaataaacgccttggtttgacggtgaaagaagga-ttcatgcgttccaacactaatttgttgtggttttaac |
120 |
Q |
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| T |
42882593 |
aacactatcttatatgtgcaccatagacttataggctgcttggtttggcggtcaaagaaagattttatgtgttccaacaccaattttccgaggttttaac |
42882494 |
T |
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| Q |
121 |
aagctacaaacaataatttctcctcaaaagtaatatttcattacgaaacaaacataccattagtcc |
186 |
Q |
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| T |
42882493 |
aagctaccaatagtagcttctactcaaacgcaatattccctcgcgaaacaaacatagcattagtcc |
42882428 |
T |
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