View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4050_high_34 (Length: 213)
Name: NF4050_high_34
Description: NF4050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4050_high_34 |
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Alignment Details
Target: chr8 (Bit Score: 133; Significance: 2e-69; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 9 - 197
Target Start/End: Complemental strand, 7495002 - 7494813
Alignment:
| Q |
9 |
ggtagattattcttcaggactaaatgtcatcctaaccttaagttcatcttcctgaacaatattttcttcaaaattatcatctcaattctcatttatgtga |
108 |
Q |
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|||| ||| |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7495002 |
ggtaaattcttcttccggactaaatgtcatcctaaccttaagttcatcttcatgaacaatattttcttcaaaattatcatctcaattctcatttatgtga |
7494903 |
T |
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| Q |
109 |
tcactctcctcttggtcagatgaggtaaatcttacccccactagtgcaccga-nnnnnnngaaacaagatacttaaattaatcaactaac |
197 |
Q |
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| T |
7494902 |
tcactctcctctttgtcagatgaggtaaatcttacccccactagtgccccgattttttttaaaacaagatacttaaattaatcaactaac |
7494813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 128
Target Start/End: Complemental strand, 35048813 - 35048700
Alignment:
| Q |
18 |
ttcttcaggactaaatgtcatcctaaccttaagt---tcatcttcctgaacaatattttcttcaaaattatcatctcaattctcatttatgtgatcactc |
114 |
Q |
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| T |
35048813 |
ttcttcagaactaaatgtcatcccaatcctaggttcctcatctgcttgaacaatatttgcttctaaattttcatcactgttttcatttatgtgatcaacc |
35048714 |
T |
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| Q |
115 |
tcctcttggtcaga |
128 |
Q |
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| T |
35048713 |
tcctcttggacaga |
35048700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 51 - 128
Target Start/End: Original strand, 53325407 - 53325484
Alignment:
| Q |
51 |
ttcatcttcctgaacaatattttcttcaaaattatcatctcaattctcatttatgtgatcactctcctcttggtcaga |
128 |
Q |
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| T |
53325407 |
ttcatctgcttgaacaatatttgcttctaaatttttatcactattttcatttatgtgatcaacctcctcttggacaga |
53325484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 51 - 128
Target Start/End: Complemental strand, 14122451 - 14122374
Alignment:
| Q |
51 |
ttcatcttcctgaacaatattttcttcaaaattatcatctcaattctcatttatgtgatcactctcctcttggtcaga |
128 |
Q |
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||||||| | |||||||||||| |||| ||||| ||||| | ||| ||||||| ||||||| |||||||||| |||| |
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| T |
14122451 |
ttcatctgcttgaacaatatttgcttctaaattttcatcactattttcatttaggtgatcaacctcctcttggacaga |
14122374 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 121
Target Start/End: Complemental strand, 1177973 - 1177867
Alignment:
| Q |
18 |
ttcttcaggactaaatgtcatcctaaccttaagttcat---cttcctgaacaatattttcttcaaaattatcatctcaattctcatttatgtgatcactc |
114 |
Q |
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|||||||| || ||||| ||||| |||||||||||||| |||| |||| ||||||| |||| ||||| ||| |||| |||||||||||||| || |
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| T |
1177973 |
ttcttcagaacaaaatgacatcccaaccttaagttcatctgcttcttgaataatatttgcttctaaatttccattgcaatattcatttatgtgatcgatc |
1177874 |
T |
|
| Q |
115 |
tcctctt |
121 |
Q |
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||||||| |
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|
| T |
1177873 |
tcctctt |
1177867 |
T |
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