View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4050_high_35 (Length: 205)

Name: NF4050_high_35
Description: NF4050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4050_high_35
NF4050_high_35
[»] chr1 (2 HSPs)
chr1 (104-184)||(29517383-29517463)
chr1 (13-71)||(29517497-29517555)
[»] chr7 (1 HSPs)
chr7 (136-184)||(40103529-40103577)


Alignment Details
Target: chr1 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 104 - 184
Target Start/End: Complemental strand, 29517463 - 29517383
Alignment:
Q  104 gtctgagtctaacacaataatgcaatttcaaacagacttcttgaagatgttcacattttacatatggaagaatgtcccaca 184  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29517463 gtctgagtctaacacaataatgcaatttcaaacagacttcttgaagatgttcacattttacatatggaagaatgtcccaca 29517383  T

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Target: chr1; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 13 - 71
Target Start/End: Complemental strand, 29517555 - 29517497
Alignment:
Q  13 attattctcaaaaccgtacaaattattaacaacagttcaaacaaagaaatacagttaga 71  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29517555 attattctcaaaaccgtacaaattattaacaacagttcaaacaaagaaatacagttaga 29517497  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 184
Target Start/End: Original strand, 40103529 - 40103577
Alignment:
Q  136 cagacttcttgaagatgttcacattttacatatggaagaatgtcccaca 184  Q
    ||||||| |||||||| ||||  ||||||||||||||||| ||||||||    
T  40103529 cagacttgttgaagatcttcagcttttacatatggaagaacgtcccaca 40103577  T

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