View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4050_high_9 (Length: 365)
Name: NF4050_high_9
Description: NF4050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4050_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 350
Target Start/End: Complemental strand, 40960654 - 40960306
Alignment:
| Q |
1 |
atatgcatcagttaaaaaccaaacagcataggaggctttcgaaaacatctagcatttttgcggtacacaagtagttttctgaaagtgcattctgagatat |
100 |
Q |
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| T |
40960654 |
atatgcatcagttaaaaaccaaacagcataggaggctttcgaaaacatctagcatttttgcggtacacaagtagttttctgaaagtgcattctgagatat |
40960555 |
T |
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| Q |
101 |
ttatctaacatgtgaatcattttaagatgtaccaacaattcctttactacttctatccaacacttggaaggcaaggaacgacaaaatcttcggttttaaa |
200 |
Q |
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| T |
40960554 |
ttatctaacatgtgaatcattttaagatgtaccaacaattcctttactacttctatccaacacttggaaggcaaggaacgacaaaatcttcggttttaaa |
40960455 |
T |
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| Q |
201 |
gcatctaaagtgccggaggttgtagaggcgataaaaagtttgtcttggagtttgtttttggggaagaattcgggtccaccttgcctcttttacaaatggt |
300 |
Q |
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| T |
40960454 |
gcatctaaagtgccggaggttgtagaggcgataaaaagtttgtcttggagtttgttttt-gggaagaattcgggtccaccttgcctcttttacgaatggt |
40960356 |
T |
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| Q |
301 |
ttacattgtatgcttaggtaatttagtggtgtttgtttagttggttagat |
350 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40960355 |
ttacattgtatgcttaggtaatttagtggtgtttgtttagttggttagat |
40960306 |
T |
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