View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4050_low_1 (Length: 1053)
Name: NF4050_low_1
Description: NF4050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4050_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 265; Significance: 1e-147; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 426 - 763
Target Start/End: Complemental strand, 14755370 - 14755041
Alignment:
| Q |
426 |
tcatgtattccctccgtaacaaaatatttaagcaaaaaagtatatgtatttggtccaaatttatatcagattcatttagactagatacatgtatctggtt |
525 |
Q |
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| T |
14755370 |
tcatgtattccctccgtaacaaaatatataagcaaaaaagtatatatatttggtctaaatttagatcagattcatttagacg--------gtatctggtt |
14755279 |
T |
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| Q |
526 |
aaaatttgggccacatacatgagatttttatttatattttgttacggaaggagtatgtttgtatatctgtgggtgtcaaaatgtaaaatttaagaagaga |
625 |
Q |
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| T |
14755278 |
aaaatttgggccacatacatgagatttttatttatattttgttacggaaggagtatgtttgtacatctgtaggtgccaaaatataaaatttaagaagtga |
14755179 |
T |
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| Q |
626 |
aaaagacactaatattgatggaaaattttcaatatcacctttacagagtttggtcaaagaacgtgatcaagcaggtctaaagaagaactcaacagaagtt |
725 |
Q |
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| T |
14755178 |
aaaggacactaatattgatggaaaattttcaatatcacctttacagagtttggtcaaagaacgtgatcaagcaggtctaaagaagaactcaacagaagtt |
14755079 |
T |
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| Q |
726 |
cacaaattcatagaagaacttgttaaaattggtaaagt |
763 |
Q |
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| T |
14755078 |
cacaaattcatagaagaacttgttaaaattggtaaagt |
14755041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 834 - 1039
Target Start/End: Complemental strand, 14754970 - 14754765
Alignment:
| Q |
834 |
aagaaaaatatattgatactagtgagtatatatatttcagattttcctggatcaaaagcagtatctgaagcatcatccaagtttggaccagccttagttt |
933 |
Q |
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| T |
14754970 |
aagaaaaatatattgatacaagtgagtatatatatttcagattttcctggatcaaaagcagtatctgaagcatcatccaagtttggaccagccttagttt |
14754871 |
T |
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| Q |
934 |
caggtccagttttctttgtttttgagaaggtatcaactttcatagtcacagaagagaaagtggaagaagcaccagctactacagaaacaaaaacagaaga |
1033 |
Q |
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| T |
14754870 |
caggtccagttttctttgtttttgagaaggtatcaactttcatagtcacagaagagaaagttgaagaagcaccagctactacagaaacaaaaacagaaga |
14754771 |
T |
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| Q |
1034 |
tgaaac |
1039 |
Q |
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| T |
14754770 |
tgaaac |
14754765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 167; E-Value: 7e-89
Query Start/End: Original strand, 196 - 366
Target Start/End: Complemental strand, 14755603 - 14755433
Alignment:
| Q |
196 |
gtcttatggttttttatatacgttgaaaatgaaaaactagttcatatatttgatgtggtttggtattttgtttaggagggaatcaataaagagtttgagg |
295 |
Q |
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| T |
14755603 |
gtcttatggttttttatatacgttgaaaatgaaaaactagttcatatatttgatgtggtttggtattttgtttaggagggaatcaataaagagtttgagg |
14755504 |
T |
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| Q |
296 |
aaaagaaaactgaacttcaaacaaaagtacttgtggtatatgaagcatcttcaactgaaatcaaggtaaga |
366 |
Q |
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| T |
14755503 |
aaaagaaaactgaacttcaaacaaaagtacttgcggtatatgaagcatcttcaactgaaatcaaggtaaga |
14755433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 152; E-Value: 6e-80
Query Start/End: Original strand, 8 - 159
Target Start/End: Complemental strand, 14755774 - 14755623
Alignment:
| Q |
8 |
aaaaacatttggaagcaaaagatgggttactggacaacaaaggttcttcccaagatcaagaaggtttttgagaagaatagtactaagaaaacagctgctg |
107 |
Q |
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| T |
14755774 |
aaaaacatttggaagcaaaagatgggttactggacaacaaaggttcttcccaagatcaagaaggtttttgagaagaatagtactaagaaaacagctgctg |
14755675 |
T |
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| Q |
108 |
ctgaggtttccaagacctttgatgagtcaaaggtttgttttcttaaatttta |
159 |
Q |
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| T |
14755674 |
ctgaggtttccaagacctttgatgagtcaaaggtttgttttcttaaatttta |
14755623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 436 - 488
Target Start/End: Complemental strand, 30102689 - 30102639
Alignment:
| Q |
436 |
cctccgtaacaaaatatttaagcaaaaaagtatatgtatttggtccaaattta |
488 |
Q |
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| T |
30102689 |
cctctgtaacaaaatat--aggcaaaaaagtatatgtatctggtccaaattta |
30102639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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