View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4050_low_11 (Length: 354)
Name: NF4050_low_11
Description: NF4050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4050_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 82 - 347
Target Start/End: Original strand, 6455507 - 6455772
Alignment:
| Q |
82 |
agatatttggatttgacagaaactatagtataactttatgattttcaattgaagtgatgatgtgatgaattattaagttaatgtgtctgataaagtaaga |
181 |
Q |
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| T |
6455507 |
agatatttggatttgacagaaactatagtataactttatgattttcaattgaagttatgatgtgatgaattattaagttaatgtgtctgataaagtaaga |
6455606 |
T |
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| Q |
182 |
gcaatgaaattttgcaggtcatgggatactgcagacacaagggattaatattgttcctttgcatggagctaattcttcagctgatgagagaccaaattta |
281 |
Q |
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| T |
6455607 |
gcaatgaaattttgcaggtcatgggatactgcagacacaagggattaatattgttcctttgcatggagctaattcttcagctgatgagagaccaaattta |
6455706 |
T |
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| Q |
282 |
ccacaaccacttcaaaattcacttaggtnnnnnnnnnctatgctaattttctctcagtatattaat |
347 |
Q |
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| T |
6455707 |
cctcaaccacttcaaaattcacttaggtaaaaaaaaactatgctaattttctctcagtatattaat |
6455772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 6455426 - 6455474
Alignment:
| Q |
1 |
ggagcaggtaattatattttcataatttcttctattaattattgcacaa |
49 |
Q |
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| T |
6455426 |
ggagcaggtaattatattttcataatttcttctattaattattgcacaa |
6455474 |
T |
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