View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4050_low_13 (Length: 349)
Name: NF4050_low_13
Description: NF4050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4050_low_13 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 304; Significance: 1e-171; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 19 - 338
Target Start/End: Complemental strand, 43174526 - 43174207
Alignment:
| Q |
19 |
atcaagtccacctacgataaccagatgaagatagttgacttacagaactctcaagaagcacagctgagataggaaatctggcactgcaccagtcaaattg |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43174526 |
atcaagtccacctacgataaccagatgaagatagttgacttacagaactctcaagaagcgcagctgagataggaaatctggcactgcaccagtcaaattg |
43174427 |
T |
|
| Q |
119 |
ttatctgacaaatccctaatattggagcaaaatgtttttactcaactttaagagtatgcatcatttttgtgatcaacttactagcttgctatttgttttt |
218 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
43174426 |
ttatctgacaaatccctaatattggaacaaaatgtttttactcaactttaagagtatgcttcattttagtgatcaacttactagcttgctatttgttttt |
43174327 |
T |
|
| Q |
219 |
cgtgtacataatagattcaagaactctctattgacttcagattggatatcccagaagctatagttccaattaaaccgctggaagttaagttcctgaagca |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43174326 |
cgtgtacataatagattcaagaactctctattgacttcagattggatatcccagaagctatagttccaattaaaccgctggaagttaagttcctgaagca |
43174227 |
T |
|
| Q |
319 |
tgattatgaaattcattcat |
338 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
43174226 |
tgattatgaaattcattcat |
43174207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 44 - 330
Target Start/End: Original strand, 43222969 - 43223263
Alignment:
| Q |
44 |
tgaagatagttgacttacagaactctcaagaagcacagctgagataggaaatctggcactgcaccagtcaaattgttatctgacaaatccctaatattgg |
143 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| | |||||||||||||||| ||||| || |||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
43222969 |
tgaagaaagttgacttacagaactctcaagaagcgcggctgagataggaaatcaggcacagctccagtcaaattgttatttgacaaatccctaaaattgg |
43223068 |
T |
|
| Q |
144 |
agcaaaatgtttttactcaactttaagagtatgcatcatttttgtgatcaacttactagcttgctatttgtttttcgtgtacataatagattcaagaact |
243 |
Q |
| |
|
| |||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
43223069 |
aacaaaatgtttttactcaactttaagagtatgcttcatttttgggatcaacttattagcttgctatttgttttttgtgtacataatagattcaagaact |
43223168 |
T |
|
| Q |
244 |
--------ctctattgacttcagattggatatcccagaagctatagttccaattaaaccgctggaagttaagttcctgaagcatgattatgaaat |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
43223169 |
tacaaatattctattgacttcagattggatatcccagaagctatagttccaattaaaccgctggaagttaagttcctaaagcatgattatgaaat |
43223263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 36 - 168
Target Start/End: Complemental strand, 43164802 - 43164670
Alignment:
| Q |
36 |
taaccagatgaagatagttgacttacagaactctcaagaagcacagctgagataggaaatctggcactgcaccagtcaaattgttatctgacaaatccct |
135 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
43164802 |
taaccatatgaagatagttgacttacagaactctcaagaagcgcagctgagataggaaatctggcacagcaccagtcaaattgttatttgacaaatccct |
43164703 |
T |
|
| Q |
136 |
aatattggagcaaaatgtttttactcaacttta |
168 |
Q |
| |
|
|| |||||| ||||||||||||||||||||||| |
|
|
| T |
43164702 |
aaaattggaacaaaatgtttttactcaacttta |
43164670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 245 - 331
Target Start/End: Complemental strand, 43164594 - 43164508
Alignment:
| Q |
245 |
tctattgacttcagattggatatcccagaagctatagttccaattaaaccgctggaagttaagttcctgaagcatgattatgaaatt |
331 |
Q |
| |
|
||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
43164594 |
tctatggacttcagattggatatgccagcagctatagttccaattaaaccgctggaagttaagttcctaaagcatggttatgaaatt |
43164508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University