View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4050_low_14 (Length: 328)
Name: NF4050_low_14
Description: NF4050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4050_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 108 - 308
Target Start/End: Complemental strand, 1855333 - 1855133
Alignment:
| Q |
108 |
cgtacagagacgtgagacgaaaaatctcatttccatttgaccttggggatttatgtctaggacttgtatattcttaccataaattaatttggaattgtct |
207 |
Q |
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| T |
1855333 |
cgtacagagatgtgagacgaaaaatctcatttccatttgaccttggggatttatgtctaggacttgtatattcttaccataaattaatttggaattgtct |
1855234 |
T |
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| Q |
208 |
gtacaattgagcataaatttggaatttatgtaacatggtgtatgatcttgtgttgttgaatttcctatgccaaatggatatggaacttttacacctccac |
307 |
Q |
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| T |
1855233 |
gtacaagtgagcataaatttggaatttatgtaacatggtgtatgatcttgtgctgttgaatttcctatgccaaatggatatggaacttttacacctccac |
1855134 |
T |
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| Q |
308 |
a |
308 |
Q |
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| T |
1855133 |
a |
1855133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 235 - 314
Target Start/End: Original strand, 1844913 - 1844992
Alignment:
| Q |
235 |
atgtaacatggtgtatgatcttgtgttgttgaatttcctatgccaaatggatatggaacttttacacctccacaagtata |
314 |
Q |
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| T |
1844913 |
atgtaaaatggtgtatgatcttgtgttgttgaatttcctatgccaaatggatatggaatgtttatatctccacaagtata |
1844992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 14 - 73
Target Start/End: Complemental strand, 1855421 - 1855362
Alignment:
| Q |
14 |
tgtctgtgcttgaaattgcgagagaagaaactctgagagaaggtttatttgctttttcgg |
73 |
Q |
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| T |
1855421 |
tgtctgtgcttgaaattgcgagggaagaaactctgagagaaggtttatttgctttttcgg |
1855362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 119 - 292
Target Start/End: Original strand, 1817866 - 1818039
Alignment:
| Q |
119 |
gtgagacgaaaaatctcatttccatttgaccttggggatttatgtctaggacttgtatattcttaccataaattaatttggaattgtctgtacaattgag |
218 |
Q |
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| T |
1817866 |
gtgagactgaaaatttcatttccacttgaccttggggatttatgtccaggacttcgatacccctaggccgaattaattttgagttgtttacacaggtgag |
1817965 |
T |
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| Q |
219 |
cataaatttggaatttatgtaacatggtgtatgatcttgtgttgttgaatttcctatgccaaatggatatggaa |
292 |
Q |
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| T |
1817966 |
ttcaaattttgaatccatgtaacatggtgtatgatgttgtgctgttgaatttcctatgccaaatggatatggaa |
1818039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 123 - 224
Target Start/End: Complemental strand, 37566845 - 37566744
Alignment:
| Q |
123 |
gacgaaaaatctcatttccatttgaccttggggatttatgtctaggacttgtatattcttaccataaattaatttggaattgtctgtacaattgagcata |
222 |
Q |
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|||||||||| |||||||||||||||| || |||||||||||||||||||||| |||||||||| ||||||||||| |||| ||||||| ||||| || |
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| T |
37566845 |
gacgaaaaatttcatttccatttgaccgtgcggatttatgtctaggacttgtagattcttaccacggattaatttggagttgtttgtacaagtgagctta |
37566746 |
T |
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| Q |
223 |
aa |
224 |
Q |
| |
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|| |
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| T |
37566745 |
aa |
37566744 |
T |
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