View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4050_low_16 (Length: 318)
Name: NF4050_low_16
Description: NF4050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4050_low_16 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 179; Significance: 1e-96; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 71 - 300
Target Start/End: Complemental strand, 20431649 - 20431419
Alignment:
| Q |
71 |
gataaagtctccaaatttt-gaagcagggaaaattgttgttgactcatagaagaacaatcctttcattcttggatcccaagcatttgatgtgtctatttt |
169 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||| |
|
|
| T |
20431649 |
gataaagtctccaaattcaagaagcagtgaaaattgttgttgactcatagtagaacaatcctttgattcttggatcccaagcacatgatgtgtctatttt |
20431550 |
T |
|
| Q |
170 |
tgttgaatataagcatgaacctgaagcttgaatttttccttgacagccaattacaggataaccgatgaagaattaggctattgttcttcaaaccattggc |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
20431549 |
tgttgaatataagcatgaacctgaagcttgaatttttccttgatagccaattacaggataaccgatgaagaattaagctattgttcttcaaaccattggc |
20431450 |
T |
|
| Q |
270 |
tgttactttcttgaattccaatgtagtagat |
300 |
Q |
| |
|
||||||||||| |||| |||||||||||||| |
|
|
| T |
20431449 |
tgttactttctagaatcccaatgtagtagat |
20431419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 71 - 300
Target Start/End: Complemental strand, 10018048 - 10017820
Alignment:
| Q |
71 |
gataaagtctccaaattttgaagcagggaaaattgttgttgactcatagaagaacaatcctttcattcttggatcccaagcatttgatgtgtctattttt |
170 |
Q |
| |
|
||||||||||||||||| | ||||||||||| ||||||||||||| ||||||||||||||||| |||| ||||||||||||| ||||||||||||| || |
|
|
| T |
10018048 |
gataaagtctccaaattctaaagcagggaaagttgttgttgactcctagaagaacaatcctttgattcctggatcccaagcacatgatgtgtctattctt |
10017949 |
T |
|
| Q |
171 |
gttgaatataagcatgaacctgaagcttgaatttttccttgacagccaattacaggataaccgatgaagaattaggctattgttcttcaaaccattggct |
270 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||| |||||| | ||||||||||||||||||||| |
|
|
| T |
10017948 |
gttgaatataagcatgaacctgaagcttgcatttttccttgatagccaattacaggataaccggtgaag-attaggttgttgttcttcaaaccattggct |
10017850 |
T |
|
| Q |
271 |
gttactttcttgaattccaatgtagtagat |
300 |
Q |
| |
|
|||||||||| |||| |||||||||||||| |
|
|
| T |
10017849 |
gttactttctagaatcccaatgtagtagat |
10017820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 71 - 296
Target Start/End: Original strand, 8714517 - 8714741
Alignment:
| Q |
71 |
gataaagtctccaaattttgaagcagggaaaattgttgttgactcatagaagaacaatcctttcattcttggatcccaagcatttgatgtgtctattttt |
170 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||| || |
|
|
| T |
8714517 |
gataaagtctccaaattttgaagcagggaaaattgatgttgactcatagaagaacaatcctttgattcttggatcccattcacatgatgtgtctattctt |
8714616 |
T |
|
| Q |
171 |
gttgaatataagcatgaacctgaagcttgaatttttccttgacagccaattacaggataaccgatgaagaattaggctattgttcttcaaaccattggct |
270 |
Q |
| |
|
||||||||||||||||||||||||| | | ||||| |||||| |||||||||||||||||||| ||||| |||||| |||||||||||| ||||||||| |
|
|
| T |
8714617 |
gttgaatataagcatgaacctgaagttagcattttaccttgatagccaattacaggataaccggtgaag-attaggtgattgttcttcaatccattggct |
8714715 |
T |
|
| Q |
271 |
gttactttcttgaattccaatgtagt |
296 |
Q |
| |
|
|||| |||||||||| |||||||||| |
|
|
| T |
8714716 |
gttaatttcttgaatcccaatgtagt |
8714741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 71 - 295
Target Start/End: Original strand, 8733337 - 8733560
Alignment:
| Q |
71 |
gataaagtctccaaattttgaagcagggaaaattgttgttgactcatagaagaacaatcctttcattcttggatcccaagcatttgatgtgtctattttt |
170 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||||| ||| ||||||||||||| || |
|
|
| T |
8733337 |
gataaagtctccaaactttgaagcagggaaaattgctgttgactcatagaaggacaatcctttgattcttggatcccatgcacatgatgtgtctattctt |
8733436 |
T |
|
| Q |
171 |
gttgaatataagcatgaacctgaagcttgaatttttccttgacagccaattacaggataaccgatgaagaattaggctattgttcttcaaaccattggct |
270 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||| |||||| |||||||||||||||||||| ||||| ||||||| ||||| ||||||||||||||| |
|
|
| T |
8733437 |
gttgaatataagcatgaacctgaagtttgcattttgccttgatagccaattacaggataaccggtgaag-attaggccgttgtttttcaaaccattggct |
8733535 |
T |
|
| Q |
271 |
gttactttcttgaattccaatgtag |
295 |
Q |
| |
|
|||| ||||||| || ||||||||| |
|
|
| T |
8733536 |
gttaatttcttgtatcccaatgtag |
8733560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 74
Target Start/End: Complemental strand, 20431997 - 20431934
Alignment:
| Q |
11 |
cagagaatacattctgtggatccatttgnnnnnnngcttcaataaaaagattaaacttcggata |
74 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
20431997 |
cagagaatacatcttgtggatccatttgtttttttgcttcaataaaaagattaaacttcggata |
20431934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University