View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4050_low_17 (Length: 316)
Name: NF4050_low_17
Description: NF4050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4050_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 18 - 310
Target Start/End: Complemental strand, 48532556 - 48532261
Alignment:
| Q |
18 |
attatttctcacttcactttacaaatacaggaggatgttttgtatgcaagagttcatacaactggagatccagttcaggtgaacatactgatctgacatg |
117 |
Q |
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| T |
48532556 |
attatttctcacttcactttacaaatacaggaggatgttttgtatgcaagagttcatacaactggagatccagttcaggtgaacatactgatctgacata |
48532457 |
T |
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| Q |
118 |
atttgttgaactaaaatgatacaaagacatgcttattactatg---nnnnnnnatttatttatttgacagccctattggagaaaataagagaaatggtga |
214 |
Q |
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| T |
48532456 |
atttgttgaactaaaatgatacaaagacatgcttattactatgttttttttttttttttttatttgacagccctattggagaaaataagagaaatggtga |
48532357 |
T |
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| Q |
215 |
agtctatagactttttgttgttggcagccaaaggaatgagagcagaaaatggatccatctttttgaaggagttacagctgtaatattctgtgctgc |
310 |
Q |
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| T |
48532356 |
agtctatagactttttgatgttggcggccaaaggaatgagagcagaaaatggatccatctttttgaaggagttacagctgtaatattctgcgctgc |
48532261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 176 - 310
Target Start/End: Complemental strand, 48529400 - 48529266
Alignment:
| Q |
176 |
atttgacagccctattggagaaaataagagaaatggtgaagtctatagactttttgttgttggcagccaaaggaatgagagcagaaaatggatccatctt |
275 |
Q |
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| T |
48529400 |
atttgacagccctgttggagaaaataagagaagtggtgaagtctatagactctttgatgttggtggcaagagaaatgagaggagaaaatggatccatctt |
48529301 |
T |
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| Q |
276 |
tttgaaggagttacagctgtaatattctgtgctgc |
310 |
Q |
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| T |
48529300 |
tttgaaggagttacacctgtaatatactgcgctgc |
48529266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 80 - 133
Target Start/End: Complemental strand, 48529472 - 48529419
Alignment:
| Q |
80 |
tggagatccagttcaggtgaacatactgatctgacatgatttgttgaactaaaa |
133 |
Q |
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| T |
48529472 |
tggagatccagttcaggtgaacatactgatctgacataatttgttcgactaaaa |
48529419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 177 - 306
Target Start/End: Complemental strand, 4020720 - 4020591
Alignment:
| Q |
177 |
tttgacagccctattggagaaaataagagaaatggtgaagtctatagactttttgttgttggcagccaaaggaatgagagcagaaaatggatccatcttt |
276 |
Q |
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| T |
4020720 |
tttgacagccctgttggagaaaacaagaaaagtggtgaagtctatagactgtttgatgtcggtggccagagaaatgagaggaggaaatggatccatctgt |
4020621 |
T |
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| Q |
277 |
ttgaaggagttacagctgtaatattctgtg |
306 |
Q |
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| T |
4020620 |
ttgaaggagtttcagctgtaatattctgtg |
4020591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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