View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4050_low_18 (Length: 294)
Name: NF4050_low_18
Description: NF4050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4050_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 9 - 279
Target Start/End: Original strand, 25612147 - 25612415
Alignment:
| Q |
9 |
agcataggatatgttaatattaatatacagtaaatgatatatcaaagtgtactacatagctacataagcaaatcccacccacacccactgataggacact |
108 |
Q |
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| T |
25612147 |
agcagaggatatgttaatattaatatacagtaaatgatatatcaaagtgtactacatagctacataagcaaatcccacccacacccactgataggacact |
25612246 |
T |
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| Q |
109 |
agaattgacaaactctacgaaataaaccagtagaaaattttaagatcacccctatcattgaacatatgcaacccttcttccactgcattcatcatttgcg |
208 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| | | |
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| T |
25612247 |
agaattgacaaactctatcaaataaaccagtagaaaattttaagatcactcctatcattgaacatatgcaacccttcttccactgtattcatcattcgtg |
25612346 |
T |
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| Q |
209 |
cgcactttaactccaagttcaacaatgaaccacacttatgaaacagtcatacccagttgatatgcacaaga |
279 |
Q |
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| T |
25612347 |
cgcacttaaaatccaagttgaacaatgaaccacacttttgaa--agtcatgcccagttaatatgcacaaga |
25612415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 8 - 279
Target Start/End: Complemental strand, 25616089 - 25615820
Alignment:
| Q |
8 |
aagcataggatatgttaatattaatatacagtaaatgatatatcaaagtgtactacatagctacataagcaaatcccacccacacccactgataggacac |
107 |
Q |
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||||| |||||| |||| |||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||| |||||||||| |
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| T |
25616089 |
aagcacaggatacgttactattaatata--gtaaatgatatatcaaagtgtactgcataattacataagcaaatcccatccacacccaccgataggacac |
25615992 |
T |
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| Q |
108 |
tagaattgacaaactctacgaaataaaccagtagaaaattttaagatcacccctatcattgaacatatgcaacccttcttccactgcattcatcatttgc |
207 |
Q |
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|||||||| | ||||||| ||||||||||||||||| ||||||||||||| ||||||||| | ||||||| ||||||||||||||||||||||||||||| |
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| T |
25615991 |
tagaattgtcgaactctatgaaataaaccagtagaatattttaagatcactcctatcattaagcatatgccacccttcttccactgcattcatcatttgc |
25615892 |
T |
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| Q |
208 |
gcgcactttaactccaagttcaacaatgaaccacacttatgaaacagtcatacccagttgatatgcacaaga |
279 |
Q |
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||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |
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| T |
25615891 |
gcgcactttaactccaagttcaacaatgaaccatacttttgaaacagtcatacccagttgatatgcacaaga |
25615820 |
T |
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