View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4050_low_2 (Length: 744)

Name: NF4050_low_2
Description: NF4050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4050_low_2
NF4050_low_2
[»] chr4 (51 HSPs)
chr4 (16-652)||(50668544-50669181)
chr4 (84-286)||(50250804-50251006)
chr4 (98-286)||(37827022-37827210)
chr4 (23-337)||(7877534-7877847)
chr4 (15-274)||(48852534-48852793)
chr4 (15-142)||(7908325-7908446)
chr4 (182-337)||(7773938-7774093)
chr4 (184-286)||(48870401-48870503)
chr4 (184-286)||(48886087-48886189)
chr4 (468-537)||(7822585-7822654)
chr4 (473-537)||(7813096-7813160)
chr4 (445-561)||(45372427-45372543)
chr4 (445-561)||(48156797-48156913)
chr4 (182-286)||(48875705-48875809)
chr4 (173-537)||(7771020-7771379)
chr4 (479-537)||(7800253-7800311)
chr4 (173-574)||(7789668-7790064)
chr4 (416-572)||(48870123-48870279)
chr4 (416-572)||(48885809-48885965)
chr4 (438-534)||(49041501-49041597)
chr4 (180-279)||(48170690-48170789)
chr4 (473-539)||(45366619-45366685)
chr4 (80-150)||(48170581-48170651)
chr4 (438-520)||(48891042-48891124)
chr4 (468-574)||(50251201-50251307)
chr4 (110-155)||(7813464-7813509)
chr4 (110-155)||(7822953-7822998)
chr4 (105-144)||(7237767-7237806)
chr4 (105-144)||(7771396-7771435)
chr4 (105-144)||(7790081-7790120)
chr4 (438-520)||(47207567-47207649)
chr4 (473-582)||(7238118-7238227)
chr4 (468-561)||(7904624-7904717)
chr4 (88-145)||(48147744-48147801)
chr4 (83-144)||(48705381-48705442)
chr4 (440-513)||(48875486-48875559)
chr4 (173-241)||(7237823-7237891)
chr4 (440-520)||(7877353-7877433)
chr4 (173-337)||(7908142-7908306)
chr4 (473-561)||(48862833-48862921)
chr4 (89-144)||(7773845-7773900)
chr4 (438-537)||(7907941-7908040)
chr4 (469-516)||(45385181-45385228)
chr4 (15-58)||(48705331-48705374)
chr4 (479-594)||(48902509-48902624)
chr4 (184-231)||(49044310-49044357)
chr4 (659-732)||(49048505-49048579)
chr4 (458-512)||(50672161-50672215)
chr4 (114-147)||(7800629-7800662)
chr4 (186-231)||(33133930-33133975)
chr4 (472-537)||(48735712-48735777)
[»] chr7 (1 HSPs)
chr7 (87-286)||(48883657-48883856)
[»] chr8 (10 HSPs)
chr8 (92-286)||(12200163-12200357)
chr8 (92-286)||(12444591-12444785)
chr8 (410-537)||(15348478-15348605)
chr8 (80-142)||(12195300-12195362)
chr8 (80-142)||(12439728-12439790)
chr8 (181-286)||(12195156-12195261)
chr8 (181-286)||(12439584-12439689)
chr8 (485-520)||(4032326-4032361)
chr8 (468-561)||(12199899-12199992)
chr8 (468-561)||(12444327-12444420)
[»] chr3 (8 HSPs)
chr3 (181-328)||(47452018-47452165)
chr3 (86-149)||(11005978-11006041)
chr3 (86-149)||(11024553-11024616)
chr3 (468-574)||(11006355-11006461)
chr3 (439-561)||(11024901-11025023)
chr3 (212-336)||(11024673-11024797)
chr3 (195-305)||(11015644-11015754)
chr3 (468-561)||(47452300-47452393)
[»] chr6 (5 HSPs)
chr6 (443-514)||(21980012-21980083)
chr6 (185-279)||(21015672-21015766)
chr6 (105-150)||(21979682-21979727)
chr6 (659-725)||(21979564-21979631)
chr6 (173-288)||(21979753-21979868)
[»] chr5 (7 HSPs)
chr5 (195-290)||(29696067-29696162)
chr5 (476-561)||(29687643-29687728)
chr5 (438-557)||(1812021-1812140)
chr5 (473-520)||(42562729-42562776)
chr5 (87-145)||(29696203-29696261)
chr5 (677-725)||(179113-179162)
chr5 (15-60)||(179113-179158)
[»] chr1 (4 HSPs)
chr1 (86-145)||(24310168-24310227)
chr1 (195-281)||(24310047-24310133)
chr1 (473-539)||(24322076-24322142)
chr1 (86-145)||(24367144-24367203)


Alignment Details
Target: chr4 (Bit Score: 594; Significance: 0; HSPs: 51)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 594; E-Value: 0
Query Start/End: Original strand, 16 - 652
Target Start/End: Complemental strand, 50669181 - 50668544
Alignment:
Q  16 caatttgtttccatgtattatctctcactgagaaaaactcaaaatttggtgaaatatcatccatggttggatcataggacaatgaaacaaccaagtaatc 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50669181 caatttgtttccatgtattatctctcactgagaaaaactcaaaatttggtgaaatatcatccatggttggatcataggacaatgaaacaaccaagtaatc 50669082  T
Q  116 atctcttgaccggtcataaccaaaaccatatagatgatcaaaatgatattcctttagtttggtatcaaaaggagacaatggtatttgtttatgaaatctg 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  50669081 atctcttgaccggtcataaccaaaaccatatagatgatcaaaatgatattcctttagtttggtatcaaaaggagacaatggtatctgtttatgaaatctg 50668982  T
Q  216 gtggatggattccatatgcagatgttggaagaacaatgcaaaaatataaagcctctacacgaacctctaatatcaggagtaaaataagatcgaggaagtg 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  50668981 gtggatggattccatatgcagatgttggaagaacaatgcaaaaatataaagcctctacacgaacctctaatatcaggagtaaaataagattgaggaagtg 50668882  T
Q  316 aaaaattaaggttgagtgaagcccaatgattgtt-agcgatgatgactcaaaatctatagatcgaaactcaagaggtgaatgtgatgatatggataaaat 414  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50668881 aaaaattaaggttgagtgaagcccaatgattgttaagcgatgatgactcaaaatctatagatcgaaactcaagaggtgaatgtgatgatatggataaaat 50668782  T
Q  415 tctacgagtgtgtgattcggcactaagttcaaaatgagaattagcaaaattgtgatcggagatgagagaaaaccaagatttacaaacgcacttgaaacgt 514  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50668781 tctacgagtgtgtgattcggcagtaagttcaaaatgagaattagcaaaattgtgatcggagatgagagaaaaccaagatttacaaacgcacttgaaacgt 50668682  T
Q  515 ataagatatttcacgggcaaccttaccaaaatttgaatgatcaattcgtaatgcagatacgacagtgttgtcttctccatctccatctctgagacaatga 614  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||  |||||||| |||||||||||||||||||||    
T  50668681 ataagatatttcacgggcaacctcaccaaaatttgaatgatcaattcgtaatgcagatactacattgtcatcttctccgtctccatctctgagacaatga 50668582  T
Q  615 cgtatggaaaaggggataatagaaaatggtcacaccga 652  Q
    ||||||||||||||||||||||||||||||||||||||    
T  50668581 cgtatggaaaaggggataatagaaaatggtcacaccga 50668544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 84 - 286
Target Start/End: Original strand, 50250804 - 50251006
Alignment:
Q  84 ggatcataggacaatgaaacaaccaagtaatcatctcttgaccggtcataaccaaaaccatatagatgatcaaaatgatattcctttagtttggtatcaa 183  Q
    |||| |||||| | |||||| ||||| ||||||||| ||||  |||||||||||||||||||||||||||   ||||||||| ||||| ||||| |||||    
T  50250804 ggatgataggatattgaaaccaccaaataatcatctgttgagtggtcataaccaaaaccatatagatgattggaatgatatttctttaatttggaatcaa 50250903  T
Q  184 aaggagacaatggtatttgtttatgaaatctggtggatggattccatatgcagatgttggaagaacaatgcaaaaatataaagcctctacacgaacctct 283  Q
    || ||||||| ||||||||| | ||||  | ||||||||||||||||| | ||| | | ||| |||| || ||||||||||| |||||||| |||||| |    
T  50250904 aatgagacaaaggtatttgtatgtgaagcccggtggatggattccataggtagaggcttgaaaaacagtggaaaaatataaatcctctacatgaaccttt 50251003  T
Q  284 aat 286  Q
    |||    
T  50251004 aat 50251006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 98 - 286
Target Start/End: Original strand, 37827022 - 37827210
Alignment:
Q  98 tgaaacaaccaagtaatcatctcttgaccggtcataaccaaaaccatatagatgatcaaaatgatattcctttagtttggtatcaaaaggagacaatggt 197  Q
    |||||||||||||||||||||||| ||| |||||||||||||||||||||||  | | |||| |||||| |  |  ||||  | |||||||||||| |||    
T  37827022 tgaaacaaccaagtaatcatctctagactggtcataaccaaaaccatatagagaaccgaaataatattcttccaaattggagttaaaaggagacaagggt 37827121  T
Q  198 atttgtttatgaaatctggtggatggattccatatgcagatgttggaagaacaatgcaaaaatataaagcctctacacgaacctctaat 286  Q
    |||||||| |||||||  |||||||||||||||||| |||||||  ||||||  |||||||||| ||| |||||||  |||||| ||||    
T  37827122 atttgtttgtgaaatccagtggatggattccatatgtagatgtttaaagaacggtgcaaaaatacaaaccctctacctgaacctttaat 37827210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 23 - 337
Target Start/End: Complemental strand, 7877847 - 7877534
Alignment:
Q  23 tttccatgtattatctctcactgagaaaaactcaaaatttggtgaaatatcatccatggttggatcataggacaatgaaacaaccaagtaatcatctctt 122  Q
    |||||||||||||||||| | |||||||||||  |||| || ||||| || | | |||||||||| ||||||||||||||| ||||||||||||||||||    
T  7877847 tttccatgtattatctctaaatgagaaaaacttcaaatgtgttgaaa-attaactatggttggattataggacaatgaaaccaccaagtaatcatctctt 7877749  T
Q  123 gaccggtcataaccaaaaccatatagatgatcaaaatgatattcctttagtttggtatcaaaaggagacaatggtatttgtttatgaaatctggtggatg 222  Q
    ||  |||||||||||||||||| || || |     |  |||| |   || ||||| |  |||||||||||  ||||||||||| | |||||  |||||||    
T  7877748 gattggtcataaccaaaaccatgtatatcaatgcgacaatatgctgctaatttggaacgaaaaggagacacaggtatttgttttttaaatccagtggatg 7877649  T
Q  223 gattccatatgcagatg-ttggaagaacaatgcaaaaatataaagcctctacacgaacctctaatatcaggagtaaaataagatcgaggaagtgaaaaat 321  Q
    ||||||||||| ||||| ||||| | ||| | ||||| |||||| ||||| || ||||||||||| |||   | |||||||| || | ||||||||||||    
T  7877648 gattccatatgtagatgattggatg-acagtacaaaagtataaaccctctgcatgaacctctaatttcaaccggaaaataaggtccacgaagtgaaaaat 7877550  T
Q  322 taaggttgagtgaagc 337  Q
    ||| ||| ||||||||    
T  7877549 taatgttcagtgaagc 7877534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 15 - 274
Target Start/End: Complemental strand, 48852793 - 48852534
Alignment:
Q  15 tcaatttgtttccatgtattatctctcactgagaaaaactcaaaatttggtgaaatatcatccatggttggatcataggacaatgaaacaaccaagtaat 114  Q
    ||||||| |||||||| |||| |||||| |||||||||||| |||| || ||||| || | | | ||||| ||||||||||| | |||| ||||||||||    
T  48852793 tcaatttctttccatgcattagctctcaatgagaaaaactctaaatgtgatgaaacattagctaaggttgtatcataggacattaaaactaccaagtaat 48852694  T
Q  115 catctcttgaccggtcataaccaaaaccatatagatgatcaaaatgatattcc-tttagtttggtatcaaaaggagacaatggtatttgtttatgaaatc 213  Q
    ||||  ||||| ||||||| |||||||||||||||| | || ||  || | || | ||   | | |||||  |||||||| ||||||||||| |||| ||    
T  48852693 catcggttgacgggtcatacccaaaaccatatagat-aacagaaatatgtgccatctaacctcgaatcaatgggagacaaaggtatttgtttgtgaactc 48852595  T
Q  214 tggtggatggattccatatgcagatgttggaagaacaatgcaaaaatataaagcctctaca 274  Q
     |||||||||||||||||   | || |  |||||||  |||||||||||||||||||||||    
T  48852594 cggtggatggattccatagataaatctctgaagaacggtgcaaaaatataaagcctctaca 48852534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 15 - 142
Target Start/End: Complemental strand, 7908446 - 7908325
Alignment:
Q  15 tcaatttgtttccatgtattatctctcactgagaaaaactcaaaatttggtgaaatatcatccatggttggatcataggacaatgaaacaaccaagtaat 114  Q
    ||||||| |||||||||||||||||| |||||||||||||  |||| || |||||    || |  || ||||| ||||||||||||||| ||||||||||    
T  7908446 tcaatttctttccatgtattatctctaactgagaaaaacttcaaatgtgttgaaa----atgc--ggatggattataggacaatgaaaccaccaagtaat 7908353  T
Q  115 catctcttgaccggtcataaccaaaacc 142  Q
    ||||||||||| ||||||||||||||||    
T  7908352 catctcttgactggtcataaccaaaacc 7908325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 182 - 337
Target Start/End: Original strand, 7773938 - 7774093
Alignment:
Q  182 aaaaggagacaatggtatttgtttatgaaatctggtggatggattccatatgcagatgttggaagaacaatgcaaaaatataaagcctctacacgaacct 281  Q
    ||||||||||   ||||||||||| | |||||  |||||||||||||||||| ||||||| |    || || ||||| |||||| |||||||||||||||    
T  7773938 aaaaggagacccaggtatttgttttttaaatccagtggatggattccatatgtagatgtttgggtcacgatacaaaagtataaaccctctacacgaacct 7774037  T
Q  282 ctaatatcaggagtaaaataagatcgaggaagtgaaaaattaaggttgagtgaagc 337  Q
    ||||| ||||  | ||||||||||   ||||| |||||||||||||| | ||||||    
T  7774038 ctaatttcagccggaaaataagattctggaagcgaaaaattaaggttcactgaagc 7774093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 184 - 286
Target Start/End: Complemental strand, 48870503 - 48870401
Alignment:
Q  184 aaggagacaatggtatttgtttatgaaatctggtggatggattccatatgcagatgttggaagaacaatgcaaaaatataaagcctctacacgaacctct 283  Q
    ||||| |||| ||||||||||| ||||||| ||||||||||||||||| | ||| | | | || ||||||||| ||||||||||||||||| |||||| |    
T  48870503 aaggacacaaaggtatttgtttgtgaaatccggtggatggattccataggtagagggttggagcacaatgcaataatataaagcctctacatgaaccttt 48870404  T
Q  284 aat 286  Q
    |||    
T  48870403 aat 48870401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 184 - 286
Target Start/End: Complemental strand, 48886189 - 48886087
Alignment:
Q  184 aaggagacaatggtatttgtttatgaaatctggtggatggattccatatgcagatgttggaagaacaatgcaaaaatataaagcctctacacgaacctct 283  Q
    ||||| |||| ||||||||||| ||||||| ||||||||||||||||| | ||| | | | || ||||||||| ||||||||||||||||| |||||| |    
T  48886189 aaggacacaaaggtatttgtttgtgaaatccggtggatggattccataggtagagggttggagcacaatgcaataatataaagcctctacatgaaccttt 48886090  T
Q  284 aat 286  Q
    |||    
T  48886089 aat 48886087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 468 - 537
Target Start/End: Complemental strand, 7822654 - 7822585
Alignment:
Q  468 gatcggagatgagagaaaaccaagatttacaaacgcacttgaaacgtataagatatttcacgggcaacct 537  Q
    |||| ||||| ||||||||||| ||||||||||| |||||||||||||||||||| ||||| ||||||||    
T  7822654 gatcagagataagagaaaaccatgatttacaaacacacttgaaacgtataagatacttcaccggcaacct 7822585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 473 - 537
Target Start/End: Complemental strand, 7813160 - 7813096
Alignment:
Q  473 gagatgagagaaaaccaagatttacaaacgcacttgaaacgtataagatatttcacgggcaacct 537  Q
    ||||| ||||||||||| ||||||||||| |||||||||||||||||||| ||||| ||||||||    
T  7813160 gagataagagaaaaccatgatttacaaacacacttgaaacgtataagatacttcaccggcaacct 7813096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 445 - 561
Target Start/End: Original strand, 45372427 - 45372543
Alignment:
Q  445 aaaatgagaattagcaaaattgtgatcggagatgagagaaaaccaagatttacaaacgcacttgaaacgtataagatatttcacgggcaaccttaccaaa 544  Q
    |||||| ||||| |||||||   |||| ||||| | |||||||||||| |||||||| || ||||||||||||||| | ||||| ||||||||||  | |    
T  45372427 aaaatgtgaatttgcaaaatgaggatcagagataatagaaaaccaagacttacaaacacatttgaaacgtataagagacttcaccggcaaccttagtaga 45372526  T
Q  545 atttgaatgatcaattc 561  Q
    |||||||| ||||||||    
T  45372527 atttgaatcatcaattc 45372543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 445 - 561
Target Start/End: Original strand, 48156797 - 48156913
Alignment:
Q  445 aaaatgagaattagcaaaattgtgatcggagatgagagaaaaccaagatttacaaacgcacttgaaacgtataagatatttcacgggcaaccttaccaaa 544  Q
    |||||||||||| |||||||    ||||||||| |||||||||||||| |||||||||||||||||||||| |||| | ||||| || |||| ||  |      
T  48156797 aaaatgagaatttgcaaaatgagtatcggagataagagaaaaccaagacttacaaacgcacttgaaacgtagaagagacttcaccggtaaccataaaagg 48156896  T
Q  545 atttgaatgatcaattc 561  Q
    |||||||| ||||||||    
T  48156897 atttgaattatcaattc 48156913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 182 - 286
Target Start/End: Complemental strand, 48875809 - 48875705
Alignment:
Q  182 aaaaggagacaatggtatttgtttatgaaatctggtggatggattccatatgcagatgttggaagaacaatgcaaaaatataaagcctctacacgaacct 281  Q
    |||||||||||  ||||||||||| ||||||| ||||||||||||||||| | ||| | | ||| |||||||||| | |||||||||||| || ||||||    
T  48875809 aaaaggagacataggtatttgtttgtgaaatccggtggatggattccataggtagaggcttgaaaaacaatgcaacagtataaagcctctgcaagaacct 48875710  T
Q  282 ctaat 286  Q
     ||||    
T  48875709 ttaat 48875705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 173 - 537
Target Start/End: Complemental strand, 7771379 - 7771020
Alignment:
Q  173 tttggtatcaaaaggagacaatggtatttgtttatgaaatctggtggatggattccatatgcagatgttggaagaacaatgcaaaaatataaagcctcta 272  Q
    ||||| |||||| |||||||  ||||||||| | | |||||   ||||||||||||||| |  |||||| | ||  |  | ||||| |||||| ||||||    
T  7771379 tttggaatcaaagggagacaccggtatttgtgttttaaatccaatggatggattccataagtggatgtttggaggtcggtacaaaagtataaaccctcta 7771280  T
Q  273 cacgaacctctaatatcaggagtaaaataagatcgaggaagtgaaaaattaaggttgagtgaagcccaatgattgttagcgatgatgactcaaaatctat 372  Q
    |||||||||||||| |||  || ||||||||||   ||||| |||||||||||||| | ||||||   || || ||||   |  |||  |||||||||||    
T  7771279 cacgaacctctaatttcaacaggaaaataagattctggaagcgaaaaattaaggttcactgaagcaggatcatcgttaagaa--atgcttcaaaatctat 7771182  T
Q  373 agatcgaaactcaagaggtgaatgtgatgatatggataaaattctacgagtgtgtgattcggcactaagttcaaaatgagaattagcaaaattgtgatcg 472  Q
    ||||||||  ||| ||| |   || | ||||||| |||||| ||||| |||||||| | | |    ||||| |||||| |||||  |||| |   ||||     
T  7771181 agatcgaatttcatgagat---tgagttgatatgcataaaaatctacaagtgtgtgttgcagaggcaagttgaaaatgtgaattttcaaagtgaggatca 7771085  T
Q  473 gagatgagagaaaaccaagatttacaaacgcacttgaaacgtataagatatttcacgggcaacct 537  Q
    ||||| |||||||||||||| ||||||||||| ||||||| ||||||| | ||||| ||||||||    
T  7771084 gagataagagaaaaccaagacttacaaacgcatttgaaacatataagagacttcaccggcaacct 7771020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 479 - 537
Target Start/End: Complemental strand, 7800311 - 7800253
Alignment:
Q  479 agagaaaaccaagatttacaaacgcacttgaaacgtataagatatttcacgggcaacct 537  Q
    ||||||||||| ||||||||||| |||||||||||||||||||| ||||| ||||||||    
T  7800311 agagaaaaccatgatttacaaacacacttgaaacgtataagatacttcaccggcaacct 7800253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 173 - 574
Target Start/End: Complemental strand, 7790064 - 7789668
Alignment:
Q  173 tttggtatcaaaaggagacaatggtatttgtttatgaaatctggtggatggattccatatgcagatgttggaagaacaatgcaaaaatataaagcctcta 272  Q
    ||||| |||||| |||||||  ||||||||| | | |||||  |||||||||||||||| |  |||||| | ||  |  | ||||| |||||| ||||||    
T  7790064 tttggaatcaaagggagacaccggtatttgtgttttaaatccagtggatggattccataagtggatgtttggaggtcggtacaaaagtataaaccctcta 7789965  T
Q  273 cacgaacctctaatatcaggagtaaaataagatcgaggaagtgaaaaattaaggttgagtgaagcccaatgattgttagcgatgatgactcaaaatctat 372  Q
    |||||||||||||| | |  || ||||||||||   ||||| |||||||||||||| | ||||||   || || ||||   |  |||  |||||||||||    
T  7789964 cacgaacctctaatttaaacaggaaaataagattctggaagcgaaaaattaaggttcactgaagcaggatcatcgttaagaa--atgcttcaaaatctat 7789867  T
Q  373 agatcgaaactcaagaggtgaatgtgatgatatggataaaattctacgagtgtgtgattcggcactaagttcaaaatgagaattagcaaaattgtgatcg 472  Q
    ||||| ||  ||| ||| |   || | ||||||  |||||| ||||| |||||||| | |||    ||||| |||||| |||||  |||| |   |||||    
T  7789866 agatcaaatttcatgagat---tgagttgatatacataaaaatctacaagtgtgtgttgcggaggcaagttgaaaatgtgaattttcaaagtgaggatcg 7789770  T
Q  473 gagatgagagaaaaccaagatttacaaacgcacttgaaacgtataagatatttcacgggcaaccttaccaaaatttgaatgatcaattcgtaatgcagat 572  Q
    ||||| | |||||||||||| ||||||||||| ||||||| ||||||| | ||||| |||||||| | || |||||| || |||| ||| | | ||||||    
T  7789769 gagataaaagaaaaccaagacttacaaacgcatttgaaacatataagagacttcaccggcaacctcatcagaatttggattatcagttcatgaggcagat 7789670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 416 - 572
Target Start/End: Complemental strand, 48870279 - 48870123
Alignment:
Q  416 ctacgagtgtgtgattcggcactaagttcaaaatgagaattagcaaaattgtgatcggagatgagagaaaaccaagatttacaaacgcacttgaaacgta 515  Q
    ||||||||||||| | ||||  | || | |||||| ||||| ||||||  | |||||||||| ||| |||||||||| ||||||||||| |||||||| |    
T  48870279 ctacgagtgtgtgttgcggctgtgagatgaaaatgtgaatttgcaaaaaggggatcggagataagaaaaaaccaagacttacaaacgcatttgaaacgaa 48870180  T
Q  516 taagatatttcacgggcaaccttaccaaaatttgaatgatcaattcgtaatgcagat 572  Q
    ||||| | ||||| || | ||| | || ||||||||  |||||||| | ||||||||    
T  48870179 taagagaattcaccggtagcctcagcagaatttgaactatcaattcatgatgcagat 48870123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 416 - 572
Target Start/End: Complemental strand, 48885965 - 48885809
Alignment:
Q  416 ctacgagtgtgtgattcggcactaagttcaaaatgagaattagcaaaattgtgatcggagatgagagaaaaccaagatttacaaacgcacttgaaacgta 515  Q
    ||||||||||||| | ||||  | || | |||||| ||||| ||||||  | |||||||||| ||| |||||||||| ||||||||||| |||||||| |    
T  48885965 ctacgagtgtgtgttgcggctgtgagatgaaaatgtgaatttgcaaaaaggggatcggagataagaaaaaaccaagacttacaaacgcatttgaaacgaa 48885866  T
Q  516 taagatatttcacgggcaaccttaccaaaatttgaatgatcaattcgtaatgcagat 572  Q
    ||||| | ||||| || | ||| | || ||||||||  |||||||| | ||||||||    
T  48885865 taagagaattcaccggtagcctcagcagaatttgaactatcaattcatgatgcagat 48885809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 438 - 534
Target Start/End: Original strand, 49041501 - 49041597
Alignment:
Q  438 taagttcaaaatgagaattagcaaaattgtgatcggagatgagagaaaaccaagatttacaaacgcacttgaaacgtataagatatttcacgggcaa 534  Q
    |||||| |||||||||||| ||||||| | |||| ||||| |||||||||||||| || |||||||| |||||||  |||||| | ||||| |||||    
T  49041501 taagttaaaaatgagaatttgcaaaatggggatcagagataagagaaaaccaagacttgcaaacgcatttgaaacaaataagagacttcactggcaa 49041597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 180 - 279
Target Start/End: Original strand, 48170690 - 48170789
Alignment:
Q  180 tcaaaaggagacaatggtatttgtttatgaaatctggtggatggattccatatgcagatgttggaagaacaatgcaaaaatataaagcctctacacgaac 279  Q
    |||| ||||||||| |||||||||||||||| || ||||||||||||||||| | |||   | |||  |  |||||||||||||||||||||||| ||||    
T  48170690 tcaataggagacaaaggtatttgtttatgaactcgggtggatggattccataggtagaaacttgaattatgatgcaaaaatataaagcctctacaggaac 48170789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 473 - 539
Target Start/End: Original strand, 45366619 - 45366685
Alignment:
Q  473 gagatgagagaaaaccaagatttacaaacgcacttgaaacgtataagatatttcacgggcaacctta 539  Q
    ||||| |||||||||||| | ||||||||||||||||||||||||||| | ||||| || |||||||    
T  45366619 gagataagagaaaaccaatacttacaaacgcacttgaaacgtataagagacttcactggtaacctta 45366685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 80 - 150
Target Start/End: Original strand, 48170581 - 48170651
Alignment:
Q  80 ggttggatcataggacaatgaaacaaccaagtaatcatctcttgaccggtcataaccaaaaccatatagat 150  Q
    |||||||||| |||||| |||||| || ||||||||||||||| || | ||||| ||||||||||||||||    
T  48170581 ggttggatcacaggacactgaaaccactaagtaatcatctcttaactgatcatacccaaaaccatatagat 48170651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 438 - 520
Target Start/End: Complemental strand, 48891124 - 48891042
Alignment:
Q  438 taagttcaaaatgagaattagcaaaattgtgatcggagatgagagaaaaccaagatttacaaacgcacttgaaacgtataaga 520  Q
    |||||| |||||| ||||| |||||||   |||| ||||  |||||||||||||| ||||||||||| |||||||||||||||    
T  48891124 taagttgaaaatgcgaatttgcaaaatgaggatctgagacaagagaaaaccaagacttacaaacgcatttgaaacgtataaga 48891042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 468 - 574
Target Start/End: Original strand, 50251201 - 50251307
Alignment:
Q  468 gatcggagatgagagaaaaccaagatttacaaacgcacttgaaacgtataagatatttcacgggcaaccttaccaaaatttgaatgatcaattcgtaatg 567  Q
    |||| ||||| |||||||||||||| ||| |||| ||||| ||  ||||||||   ||||| |||||||| || ||||||||| |||||||||||| | |    
T  50251201 gatcagagataagagaaaaccaagacttagaaacccactttaattgtataagagccttcactggcaacctaactaaaatttgagtgatcaattcgtgagg 50251300  T
Q  568 cagatac 574  Q
    |||||||    
T  50251301 cagatac 50251307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 110 - 155
Target Start/End: Complemental strand, 7813509 - 7813464
Alignment:
Q  110 gtaatcatctcttgaccggtcataaccaaaaccatatagatgatca 155  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||    
T  7813509 gtaatcatctcttgactggtcataaccaaaaccatatagattatca 7813464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 110 - 155
Target Start/End: Complemental strand, 7822998 - 7822953
Alignment:
Q  110 gtaatcatctcttgaccggtcataaccaaaaccatatagatgatca 155  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||    
T  7822998 gtaatcatctcttgactggtcataaccaaaaccatatagattatca 7822953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 105 - 144
Target Start/End: Original strand, 7237767 - 7237806
Alignment:
Q  105 accaagtaatcatctcttgaccggtcataaccaaaaccat 144  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  7237767 accaagtaatcatctcttgactggtcataaccaaaaccat 7237806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 105 - 144
Target Start/End: Complemental strand, 7771435 - 7771396
Alignment:
Q  105 accaagtaatcatctcttgaccggtcataaccaaaaccat 144  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  7771435 accaagtaatcatctcttgactggtcataaccaaaaccat 7771396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 105 - 144
Target Start/End: Complemental strand, 7790120 - 7790081
Alignment:
Q  105 accaagtaatcatctcttgaccggtcataaccaaaaccat 144  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  7790120 accaagtaatcatctcttgactggtcataaccaaaaccat 7790081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 438 - 520
Target Start/End: Complemental strand, 47207649 - 47207567
Alignment:
Q  438 taagttcaaaatgagaattagcaaaattgtgatcggagatgagagaaaaccaagatttacaaacgcacttgaaacgtataaga 520  Q
    ||||||||||||| ||||||| |||||   | ||||||||||||||||| ||||| || ||||| | ||| ||||||||||||    
T  47207649 taagttcaaaatgtgaattagaaaaatgtgggtcggagatgagagaaaatcaagacttccaaacactcttaaaacgtataaga 47207567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 473 - 582
Target Start/End: Original strand, 7238118 - 7238227
Alignment:
Q  473 gagatgagagaaaaccaagatttacaaacgcacttgaaacgtataagatatttcacgggcaaccttaccaaaatttgaatgatcaattcgtaatgcagat 572  Q
    ||||| |||||||||||||| |||||||| || |||||||  |||||| | ||||| |||||||| | || |||||| ||||| | ||| | | ||||||    
T  7238118 gagataagagaaaaccaagacttacaaacacatttgaaacagataagagacttcactggcaacctcatcagaatttggatgattagttcatgaggcagat 7238217  T
Q  573 acgacagtgt 582  Q
    || |||||||    
T  7238218 acaacagtgt 7238227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 468 - 561
Target Start/End: Complemental strand, 7904717 - 7904624
Alignment:
Q  468 gatcggagatgagagaaaaccaagatttacaaacgcacttgaaacgtataagatatttcacgggcaaccttaccaaaatttgaatgatcaattc 561  Q
    |||| ||||| |||||||||||  | |||||||| || ||||||||||||||| | ||||| |||||||  | ||| |||||||| ||||||||    
T  7904717 gatcagagataagagaaaaccataacttacaaacacatttgaaacgtataagagacttcacaggcaaccacatcaagatttgaataatcaattc 7904624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 145
Target Start/End: Original strand, 48147744 - 48147801
Alignment:
Q  88 cataggacaatgaaacaaccaagtaatcatctcttgaccggtcataaccaaaaccata 145  Q
    ||||||| |||||||| ||||||||||||||| || || ||||||| |||||||||||    
T  48147744 cataggagaatgaaaccaccaagtaatcatctgttaactggtcatacccaaaaccata 48147801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 144
Target Start/End: Original strand, 48705381 - 48705442
Alignment:
Q  83 tggatcataggacaatgaaacaaccaagtaatcatctcttgaccggtcataaccaaaaccat 144  Q
    |||||||  ||||| |||||||||||||||||||||| ||||| | ||||| ||||||||||    
T  48705381 tggatcaacggacattgaaacaaccaagtaatcatctgttgactgatcatatccaaaaccat 48705442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 440 - 513
Target Start/End: Complemental strand, 48875559 - 48875486
Alignment:
Q  440 agttcaaaatgagaattagcaaaattgtgatcggagatgagagaaaaccaagatttacaaacgcacttgaaacg 513  Q
    |||| |||||| ||||| | ||||| | | ||||||||||||||||||||||| || |||||||| ||||||||    
T  48875559 agttgaaaatgtgaatttgtaaaatggggttcggagatgagagaaaaccaagacttgcaaacgcatttgaaacg 48875486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 173 - 241
Target Start/End: Original strand, 7237823 - 7237891
Alignment:
Q  173 tttggtatcaaaaggagacaatggtatttgtttatgaaatctggtggatggattccatatgcagatgtt 241  Q
    ||||| ||||||||||||||  ||||||||||| | |||||  |||||||||||||||| | |||||||    
T  7237823 tttggaatcaaaaggagacacgggtatttgttttttaaatccagtggatggattccatacgtagatgtt 7237891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 440 - 520
Target Start/End: Complemental strand, 7877433 - 7877353
Alignment:
Q  440 agttcaaaatgagaattagcaaaattgtgatcggagatgagagaaaaccaagatttacaaacgcacttgaaacgtataaga 520  Q
    |||| |||||| ||||| ||||||||| |||| ||||| |||||||||||    ||||||| ||| |||||||||||||||    
T  7877433 agttgaaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataaga 7877353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 173 - 337
Target Start/End: Complemental strand, 7908306 - 7908142
Alignment:
Q  173 tttggtatcaaaaggagacaatggtatttgtttatgaaatctggtggatggattccatatgcagatgttggaagaacaatgcaaaaatataaagcctcta 272  Q
    ||||| ||||| ||||||||   |||| ||||| | |||||  || ||||||||||||||| ||||||  | || ||  | ||||| |||||| ||||||    
T  7908306 tttggaatcaacaggagacaggtgtatatgttttttaaatccagtagatggattccatatgtagatgtctggaggacggtacaaaagtataaaccctcta 7908207  T
Q  273 cacgaacctctaatatcaggagtaaaataagatcgaggaagtgaaaaattaaggttgagtgaagc 337  Q
    || ||||||||||| |||   | ||||| |||||| | ||| |||||| ||| ||||||||||||    
T  7908206 catgaacctctaatttcaaccggaaaatgagatcgggtaagcgaaaaagtaatgttgagtgaagc 7908142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 473 - 561
Target Start/End: Complemental strand, 48862921 - 48862833
Alignment:
Q  473 gagatgagagaaaaccaagatttacaaacgcacttgaaacgtataagatatttcacgggcaaccttaccaaaatttgaatgatcaattc 561  Q
    ||||| |||||||||||||| || |||||||| |||||||| |||||| | ||||| || ||||||| ||  ||| | |||||||||||    
T  48862921 gagataagagaaaaccaagacttgcaaacgcatttgaaacgaataagagacttcaccggtaaccttagcaggattaggatgatcaattc 48862833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 144
Target Start/End: Original strand, 7773845 - 7773900
Alignment:
Q  89 ataggacaatgaaacaaccaagtaatcatctcttgaccggtcataaccaaaaccat 144  Q
    ||||||||||  ||| ||||||||||||||||||  | ||||||||||||||||||    
T  7773845 ataggacaatacaaccaccaagtaatcatctcttacctggtcataaccaaaaccat 7773900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 438 - 537
Target Start/End: Complemental strand, 7908040 - 7907941
Alignment:
Q  438 taagttcaaaatgagaattagcaaaattgtgatcggagatgagagaaaaccaagatttacaaacgcacttgaaacgtataagatatttcacgggcaacct 537  Q
    |||||| |||||| ||||| ||||||| | || | ||||| ||||||||||| || |||| |||  ||||||||||| ||||| | ||||| ||||||||    
T  7908040 taagttgaaaatgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacgaacagacttgaaacgtgtaagagacttcaccggcaacct 7907941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 469 - 516
Target Start/End: Original strand, 45385181 - 45385228
Alignment:
Q  469 atcggagatgagagaaaaccaagatttacaaacgcacttgaaacgtat 516  Q
    |||||||| ||||||||||||||| ||||||||| | |||||||||||    
T  45385181 atcggagacgagagaaaaccaagacttacaaacggatttgaaacgtat 45385228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 58
Target Start/End: Original strand, 48705331 - 48705374
Alignment:
Q  15 tcaatttgtttccatgtattatctctcactgagaaaaactcaaa 58  Q
    ||||||| ||||||||||||| |||||| |||||||||||||||    
T  48705331 tcaatttctttccatgtattaactctcaatgagaaaaactcaaa 48705374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 479 - 594
Target Start/End: Complemental strand, 48902624 - 48902509
Alignment:
Q  479 agagaaaaccaagatttacaaacgcacttgaaacgtataagatatttcacgggcaaccttaccaaaatttgaatgatcaattcgtaatgcagatacgaca 578  Q
    |||||||||||||| |||||||| || |||||||| || ||| | || || |||||||    ||||||||| ||||||||||| | | | ||||||| ||    
T  48902624 agagaaaaccaagacttacaaacacatttgaaacgaatgagagactttaccggcaaccactgcaaaatttggatgatcaattcatgaggtagatacggca 48902525  T
Q  579 gtgttgtcttctccat 594  Q
    ||||  ||||||||||    
T  48902524 gtgtcttcttctccat 48902509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 231
Target Start/End: Original strand, 49044310 - 49044357
Alignment:
Q  184 aaggagacaatggtatttgtttatgaaatctggtggatggattccata 231  Q
    |||||||||| ||||||||||| |||| ||| ||||||||||||||||    
T  49044310 aaggagacaaaggtatttgtttgtgaactctagtggatggattccata 49044357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 659 - 732
Target Start/End: Original strand, 49048505 - 49048579
Alignment:
Q  659 catataagggaagccagcaccctcaatttgtttccatgt-ttatctctgaatgagaaaaactccaaatatgatga 732  Q
    ||||||||||| |  || ||||||||||| ||||||| | |||||||| || |||||||||||||||| ||||||    
T  49048505 catataagggatgtgagtaccctcaatttctttccatatattatctctcaacgagaaaaactccaaatgtgatga 49048579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 458 - 512
Target Start/End: Complemental strand, 50672215 - 50672161
Alignment:
Q  458 gcaaaattgtgatcggagatgagagaaaaccaagatttacaaacgcacttgaaac 512  Q
    |||||||||||||| ||||||||||||| ||| || ||| |||| ||||||||||    
T  50672215 gcaaaattgtgatcagagatgagagaaagccatgacttagaaacacacttgaaac 50672161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 147
Target Start/End: Complemental strand, 7800662 - 7800629
Alignment:
Q  114 tcatctcttgaccggtcataaccaaaaccatata 147  Q
    |||||||||||| |||||||||||||||||||||    
T  7800662 tcatctcttgactggtcataaccaaaaccatata 7800629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 231
Target Start/End: Original strand, 33133930 - 33133975
Alignment:
Q  186 ggagacaatggtatttgtttatgaaatctggtggatggattccata 231  Q
    |||||||| |||||||||||||||| || |||| ||||||||||||    
T  33133930 ggagacaaaggtatttgtttatgaactcgggtgaatggattccata 33133975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 472 - 537
Target Start/End: Original strand, 48735712 - 48735777
Alignment:
Q  472 ggagatgagagaaaaccaagatttacaaacgcacttgaaacgtataagatatttcacgggcaacct 537  Q
    |||||| |||||||||||||| |||||||| || |||||||| |||||| | ||||| || |||||    
T  48735712 ggagataagagaaaaccaagacttacaaacacatttgaaacgaataagagacttcaccggtaacct 48735777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 96; Significance: 1e-46; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 87 - 286
Target Start/End: Complemental strand, 48883856 - 48883657
Alignment:
Q  87 tcataggacaatgaaacaaccaagtaatcatctcttgaccggtcataaccaaaaccatatagatgatcaaaatgatattcctttagtttggtatcaaaag 186  Q
    |||||||||| |||||| |||| |||||||||||||||| |||||||||||||||||||||||||||| |||| || | | | |    ||| || |||||    
T  48883856 tcataggacattgaaaccaccatgtaatcatctcttgacgggtcataaccaaaaccatatagatgatcgaaataatgtacttctgaaatggaataaaaag 48883757  T
Q  187 gagacaatggtatttgtttatgaaatctggtggatggattccatatgcagatgttggaagaacaatgcaaaaatataaagcctctacacgaacctctaat 286  Q
    ||||||| ||||||||||| |||||||  ||| |||||||||||||||||||||||||||||| ||||||||| | ||| ||||||||||||||| ||||    
T  48883756 gagacaaaggtatttgtttgtgaaatccagtgtatggattccatatgcagatgttggaagaaccatgcaaaaacagaaaccctctacacgaacctttaat 48883657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 1e-24; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 92 - 286
Target Start/End: Complemental strand, 12200357 - 12200163
Alignment:
Q  92 ggacaatgaaacaaccaagtaatcatctcttgaccggtcataaccaaaaccatatagatgatcaaaatgatattcctttagtttggtatcaaaaggagac 191  Q
    ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||    ||| ||| | | ||  ||   |||||||||||||    
T  12200357 ggacaataaaaccaccaagtaatcatctcttgaccggtcataaccaaaaccatatagatgatgtcgatggtatgcatgtaacttcaaatcaaaaggagac 12200258  T
Q  192 aatggtatttgtttatgaaatctggtggatggattccatatgcagatgttggaagaacaatgcaaaaatataaagcctctacacgaacctctaat 286  Q
    || ||||||| ||| ||||| || | |||||||||||||| | |||| || |   |||| ||||| |||||||| ||||| || |||||| ||||    
T  12200257 aaaggtatttttttgtgaaacctagaggatggattccatacgtagatatttgtccaacagtgcaagaatataaaccctctgcatgaacctttaat 12200163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 92 - 286
Target Start/End: Complemental strand, 12444785 - 12444591
Alignment:
Q  92 ggacaatgaaacaaccaagtaatcatctcttgaccggtcataaccaaaaccatatagatgatcaaaatgatattcctttagtttggtatcaaaaggagac 191  Q
    ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||    ||| ||| | | ||  ||   |||||||||||||    
T  12444785 ggacaataaaaccaccaagtaatcatctcttgaccggtcataaccaaaaccatatagatgatgtcgatggtatgcatgtaacttcaaatcaaaaggagac 12444686  T
Q  192 aatggtatttgtttatgaaatctggtggatggattccatatgcagatgttggaagaacaatgcaaaaatataaagcctctacacgaacctctaat 286  Q
    || ||||||| ||| ||||| || | |||||||||||||| | |||| || |   |||| ||||| |||||||| ||||| || |||||| ||||    
T  12444685 aaaggtatttttttgtgaaacctagaggatggattccatacgtagatatttgtccaacagtgcaagaatataaaccctctgcatgaacctttaat 12444591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 410 - 537
Target Start/End: Complemental strand, 15348605 - 15348478
Alignment:
Q  410 aaaattctacgagtgtgtgattcggcactaagttcaaaatgagaattagcaaaattgtgatcggagatgagagaaaaccaagatttacaaacgcacttga 509  Q
    ||||||||||||||||||| | ||||  ||| || |||||| ||||| || || |   |||| ||||| |||||||||||||| ||||||||||| ||||    
T  15348605 aaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttga 15348506  T
Q  510 aacgtataagatatttcacgggcaacct 537  Q
    ||||||||||| | ||||| || |||||    
T  15348505 aacgtataagagacttcaccggtaacct 15348478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 80 - 142
Target Start/End: Complemental strand, 12195362 - 12195300
Alignment:
Q  80 ggttggatcataggacaatgaaacaaccaagtaatcatctcttgaccggtcataaccaaaacc 142  Q
    ||||||||||||||||||| |||| |||||||||||||||||| | | |||||||||||||||    
T  12195362 ggttggatcataggacaataaaacgaccaagtaatcatctcttaatccgtcataaccaaaacc 12195300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 80 - 142
Target Start/End: Complemental strand, 12439790 - 12439728
Alignment:
Q  80 ggttggatcataggacaatgaaacaaccaagtaatcatctcttgaccggtcataaccaaaacc 142  Q
    ||||||||||||||||||| |||| |||||||||||||||||| | | |||||||||||||||    
T  12439790 ggttggatcataggacaataaaacgaccaagtaatcatctcttaatccgtcataaccaaaacc 12439728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 286
Target Start/End: Complemental strand, 12195261 - 12195156
Alignment:
Q  181 caaaaggagacaatggtatttgtttatgaaatctggtggatggattccatatgcagatgttggaagaacaatgcaaaaatataaagcctctacacgaacc 280  Q
    ||||||||||||||  ||||| ||| |||||||| | |||||||||||||| | ||| ||| |   |||||| ||| |||||||| ||||| ||||||||    
T  12195261 caaaaggagacaattttatttctttgtgaaatctagaggatggattccatacgtagaggtttgtcaaacaattcaataatataaaccctctgcacgaacc 12195162  T
Q  281 tctaat 286  Q
    | ||||    
T  12195161 tttaat 12195156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 286
Target Start/End: Complemental strand, 12439689 - 12439584
Alignment:
Q  181 caaaaggagacaatggtatttgtttatgaaatctggtggatggattccatatgcagatgttggaagaacaatgcaaaaatataaagcctctacacgaacc 280  Q
    ||||||||||||||  ||||| ||| |||||||| | |||||||||||||| | ||| ||| |   |||||| ||| |||||||| ||||| ||||||||    
T  12439689 caaaaggagacaattttatttctttgtgaaatctagaggatggattccatacgtagaggtttgtcaaacaattcaataatataaaccctctgcacgaacc 12439590  T
Q  281 tctaat 286  Q
    | ||||    
T  12439589 tttaat 12439584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 485 - 520
Target Start/End: Original strand, 4032326 - 4032361
Alignment:
Q  485 aaccaagatttacaaacgcacttgaaacgtataaga 520  Q
    ||||||||||||||||| ||||||||||||||||||    
T  4032326 aaccaagatttacaaacacacttgaaacgtataaga 4032361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 468 - 561
Target Start/End: Complemental strand, 12199992 - 12199899
Alignment:
Q  468 gatcggagatgagagaaaaccaagatttacaaacgcacttgaaacgtataagatatttcacgggcaaccttaccaaaatttgaatgatcaattc 561  Q
    |||| ||||| ||||||||||| || |||||||| || ||||||| || |||| | ||||| |||||||| | ||  ||||||||||| |||||    
T  12199992 gatcagagataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaatgattaattc 12199899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 468 - 561
Target Start/End: Complemental strand, 12444420 - 12444327
Alignment:
Q  468 gatcggagatgagagaaaaccaagatttacaaacgcacttgaaacgtataagatatttcacgggcaaccttaccaaaatttgaatgatcaattc 561  Q
    |||| ||||| ||||||||||| || |||||||| || ||||||| || |||| | ||||| |||||||| | ||  ||||||||||| |||||    
T  12444420 gatcagagataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaatgattaattc 12444327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 5e-18; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 181 - 328
Target Start/End: Original strand, 47452018 - 47452165
Alignment:
Q  181 caaaaggagacaatggtatttgtttatgaaatctggtggatggattccatatgcagatgttggaagaacaatgcaaaaatataaagcctctacacgaacc 280  Q
    ||||||||| ||| ||||||||||| |||| ||  |||||||||||||||||| ||||||| |||||||||   |||| |||||| |||||||| |||||    
T  47452018 caaaaggaggcaaaggtatttgtttgtgaactccagtggatggattccatatgtagatgtttgaagaacaacttaaaagtataaaccctctacatgaacc 47452117  T
Q  281 tctaatatcaggagtaaaataagatcgaggaagtgaaaaattaaggtt 328  Q
    | |||| ||| || || | | |||| | |||||  |||||||||||||    
T  47452118 tttaatttcaagattatactcagattggggaagcaaaaaattaaggtt 47452165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 86 - 149
Target Start/End: Original strand, 11005978 - 11006041
Alignment:
Q  86 atcataggacaatgaaacaaccaagtaatcatctcttgaccggtcataaccaaaaccatataga 149  Q
    ||||||||||| ||| || ||||||||||||||||||||  ||||||| |||||||||||||||    
T  11005978 atcataggacactgataccaccaagtaatcatctcttgaatggtcatacccaaaaccatataga 11006041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 86 - 149
Target Start/End: Original strand, 11024553 - 11024616
Alignment:
Q  86 atcataggacaatgaaacaaccaagtaatcatctcttgaccggtcataaccaaaaccatataga 149  Q
    ||||||||||| ||| || ||||||||||||||||||||  ||||||| |||||||||||||||    
T  11024553 atcataggacactgataccaccaagtaatcatctcttgaatggtcatacccaaaaccatataga 11024616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 468 - 574
Target Start/End: Original strand, 11006355 - 11006461
Alignment:
Q  468 gatcggagatgagagaaaaccaagatttacaaacgcacttgaaacgtataagatatttcacgggcaaccttaccaaaatttgaatgatcaattcgtaatg 567  Q
    |||| ||||| ||||  ||||| || |||||||| |||||||||||||||||  | ||||| |||||||| | ||| ||||| ||||||||||| | | |    
T  11006355 gatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaacaagatttgtatgatcaattcatgagg 11006454  T
Q  568 cagatac 574  Q
    |||||||    
T  11006455 cagatac 11006461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 439 - 561
Target Start/End: Original strand, 11024901 - 11025023
Alignment:
Q  439 aagttcaaaatgagaattagcaaaattgtgatcggagatgagagaaaaccaagatttacaaacgcacttgaaacgtataagatatttcacgggcaacctt 538  Q
    |||||||||||| || || ||||| || ||||| ||||| ||||  ||||| || ||||||||||| ||||||||||| ||| | ||||| || |||||     
T  11024901 aagttcaaaatgcgattttgcaaagttatgatcagagataagagctaaccatgacttacaaacgcatttgaaacgtatgagagacttcaccggtaacctc 11025000  T
Q  539 accaaaatttgaatgatcaattc 561  Q
    | ||  ||||| |||||||||||    
T  11025001 aacatgatttgtatgatcaattc 11025023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 212 - 336
Target Start/End: Original strand, 11024673 - 11024797
Alignment:
Q  212 tctggtggatggattccatatgcagatgttggaagaacaatgcaaaaatataaagcctctacacgaacctctaatatcaggagtaaaataagatcgagga 311  Q
    |||||| |||||||||||||   | |||||||||||||||  ||||| |||||| |||||||| |||| | |||| ||| || || ||||||||   |||    
T  11024673 tctggtcgatggattccatagataaatgttggaagaacaagtcaaaactataaatcctctacaagaacttttaatttcaagattagaataagattcggga 11024772  T
Q  312 agtgaaaaattaaggttgagtgaag 336  Q
    ||   |||||||||||| |||||||    
T  11024773 agcataaaattaaggttaagtgaag 11024797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 195 - 305
Target Start/End: Original strand, 11015644 - 11015754
Alignment:
Q  195 ggtatttgtttatgaaatctggtggatggattccatatgcagatgttggaagaacaatgcaaaaatataaagcctctacacgaacctctaatatcaggag 294  Q
    ||||||||||| |||  ||  || ||||||||||||| | ||||||| |||||||||  ||||| |||||| |||||||| |||| | |||| ||| ||     
T  11015644 ggtatttgtttgtgatgtccagttgatggattccataggtagatgtttgaagaacaagtcaaaactataaatcctctacatgaacttttaatttcaagac 11015743  T
Q  295 taaaataagat 305  Q
    || ||||||||    
T  11015744 tagaataagat 11015754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 468 - 561
Target Start/End: Original strand, 47452300 - 47452393
Alignment:
Q  468 gatcggagatgagagaaaaccaagatttacaaacgcacttgaaacgtataagatatttcacgggcaaccttaccaaaatttgaatgatcaattc 561  Q
    |||| ||||| ||||||||||| || ||| ||| ||||||||| |||| |||| | ||||| |||||||| ||||| || || || ||||||||    
T  47452300 gatcagagataagagaaaaccatgacttagaaatgcacttgaagcgtacaagagacttcaccggcaacctcaccaagatctggattatcaattc 47452393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 443 - 514
Target Start/End: Original strand, 21980012 - 21980083
Alignment:
Q  443 tcaaaatgagaattagcaaaattgtgatcggagatgagagaaaaccaagatttacaaacgcacttgaaacgt 514  Q
    |||||||| ||||| ||||| ||| |||  |||||||||||||||||||| |||||||| ||||||||||||    
T  21980012 tcaaaatgtgaattcgcaaagttgggatgagagatgagagaaaaccaagacttacaaacacacttgaaacgt 21980083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 185 - 279
Target Start/End: Complemental strand, 21015766 - 21015672
Alignment:
Q  185 aggagacaatggtatttgtttatgaaatctggtggatggattccatatgcagatgttggaagaacaatgcaaaaatataaagcctctacacgaac 279  Q
    ||||||||| ||||||||||| |||| ||| |||||||||||||||| | ||||||| |||  |   |||||||||||||| |||||||| ||||    
T  21015766 aggagacaaaggtatttgtttgtgaactctagtggatggattccataggtagatgtttgaatcatggtgcaaaaatataaaccctctacatgaac 21015672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 105 - 150
Target Start/End: Original strand, 21979682 - 21979727
Alignment:
Q  105 accaagtaatcatctcttgaccggtcataaccaaaaccatatagat 150  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||    
T  21979682 accaagtaatcatttcttgactggtcataaccaaaaccatatagat 21979727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 659 - 725
Target Start/End: Original strand, 21979564 - 21979631
Alignment:
Q  659 catataagggaagccagcaccctcaatttgtttccatgt-ttatctctgaatgagaaaaactccaaat 725  Q
    ||||||||||||   ||||||||||||||||||||| || |||||||| || ||||||| ||||||||    
T  21979564 catataagggaaatgagcaccctcaatttgtttccaggtattatctctcaaagagaaaacctccaaat 21979631  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 288
Target Start/End: Original strand, 21979753 - 21979868
Alignment:
Q  173 tttggtatcaaaaggagacaatggtatttgtttatgaaatctggtggatggattccatatgcagatgttggaagaacaatgcaaaaatataaagcctcta 272  Q
    ||||| ||||| ||||||||| ||||||||||| |||| ||  || || || ||||||||| |||   | ||| |||| || ||||||||||| ||||||    
T  21979753 tttggaatcaagaggagacaaaggtatttgtttttgaagtccagtagacgggttccatatgtagagtcttgaaaaacagtggaaaaatataaatcctcta 21979852  T
Q  273 cacgaacctctaatat 288  Q
    || |||||| ||||||    
T  21979853 catgaacctttaatat 21979868  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 195 - 290
Target Start/End: Complemental strand, 29696162 - 29696067
Alignment:
Q  195 ggtatttgtttatgaaatctggtggatggattccatatgcagatgttggaagaacaatgcaaaaatataaagcctctacacgaacctctaatatca 290  Q
    |||||| |||| ||||||| |||||||||||||||||| |||| | | ||  |||| | ||||| |||||||||||||||||||||| ||| ||||    
T  29696162 ggtattcgtttgtgaaatccggtggatggattccatatacagaggcttgagtaacagttcaaaagtataaagcctctacacgaacctttaaaatca 29696067  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 476 - 561
Target Start/End: Complemental strand, 29687728 - 29687643
Alignment:
Q  476 atgagagaaaaccaagatttacaaacgcacttgaaacgtataagatatttcacgggcaaccttaccaaaatttgaatgatcaattc 561  Q
    ||||||||||||||||| |||||||| |||||||| ||||||||| | ||||| || ||| |||  |  |||||||||||||||||    
T  29687728 atgagagaaaaccaagacttacaaacacacttgaagcgtataagagacttcactggtaactttagaaggatttgaatgatcaattc 29687643  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 438 - 557
Target Start/End: Complemental strand, 1812140 - 1812021
Alignment:
Q  438 taagttcaaaatgagaattagcaaaattgtgatcggagatgagagaaaaccaagatttacaaacgcacttgaaacgtataagatatttcacgggcaacct 537  Q
    |||||| ||||||| |||| ||||| | | |||  ||||| |||||||||||  | |||||||| || ||| ||||||| ||||| ||||| || |||||    
T  1812140 taagttgaaaatgataatttgcaaagtggggatttgagataagagaaaaccataacttacaaacccatttggaacgtatgagatacttcactggtaacct 1812041  T
Q  538 taccaaaatttgaatgatca 557  Q
     | ||||||||||| |||||    
T  1812040 caacaaaatttgaacgatca 1812021  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 473 - 520
Target Start/End: Original strand, 42562729 - 42562776
Alignment:
Q  473 gagatgagagaaaaccaagatttacaaacgcacttgaaacgtataaga 520  Q
    ||||| |||||||||||||| ||||||||||| |||||||| ||||||    
T  42562729 gagattagagaaaaccaagacttacaaacgcatttgaaacgaataaga 42562776  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 87 - 145
Target Start/End: Complemental strand, 29696261 - 29696203
Alignment:
Q  87 tcataggacaatgaaacaaccaagtaatcatctcttgaccggtcataaccaaaaccata 145  Q
    |||||||||| |||||  ||||||||||||||| |||||  |||||| |||||||||||    
T  29696261 tcataggacattgaaatcaccaagtaatcatctgttgactcgtcatacccaaaaccata 29696203  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 677 - 725
Target Start/End: Complemental strand, 179162 - 179113
Alignment:
Q  677 accctcaatttgtttccatgt-ttatctctgaatgagaaaaactccaaat 725  Q
    ||||||||||| ||||||||| |||||||| |||||||||| ||||||||    
T  179162 accctcaatttctttccatgtattatctctcaatgagaaaatctccaaat 179113  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 60
Target Start/End: Complemental strand, 179158 - 179113
Alignment:
Q  15 tcaatttgtttccatgtattatctctcactgagaaaaactcaaaat 60  Q
    ||||||| |||||||||||||||||||| |||||||| ||| ||||    
T  179158 tcaatttctttccatgtattatctctcaatgagaaaatctccaaat 179113  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000007; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 86 - 145
Target Start/End: Complemental strand, 24310227 - 24310168
Alignment:
Q  86 atcataggacaatgaaacaaccaagtaatcatctcttgaccggtcataaccaaaaccata 145  Q
    ||||||||| | | |||| |||||||||||||||||||||  ||||||||||||||||||    
T  24310227 atcataggatactaaaactaccaagtaatcatctcttgactcgtcataaccaaaaccata 24310168  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 195 - 281
Target Start/End: Complemental strand, 24310133 - 24310047
Alignment:
Q  195 ggtatttgtttatgaaatctggtggatggattccatatgcagatgttggaagaacaatgcaaaaatataaagcctctacacgaacct 281  Q
    ||||||||| |||||| || ||||||||||||||||| | | ||||| ||| |||| | ||| |||||||| |||||||| ||||||    
T  24310133 ggtatttgtctatgaactccggtggatggattccatacgtaaatgtttgaaaaacactccaacaatataaaacctctacatgaacct 24310047  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 473 - 539
Target Start/End: Complemental strand, 24322142 - 24322076
Alignment:
Q  473 gagatgagagaaaaccaagatttacaaacgcacttgaaacgtataagatatttcacgggcaacctta 539  Q
    ||||| |||||||||||||| ||||||||||| |||||||| |||||| | |||||  |||||||||    
T  24322142 gagataagagaaaaccaagacttacaaacgcatttgaaacgaataagagacttcaccagcaacctta 24322076  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 145
Target Start/End: Complemental strand, 24367203 - 24367144
Alignment:
Q  86 atcataggacaatgaaacaaccaagtaatcatctcttgaccggtcataaccaaaaccata 145  Q
    ||||||||| || ||||| ||||||||||||||| |||||  |||||| |||||||||||    
T  24367203 atcataggataacgaaaccaccaagtaatcatctgttgacttgtcatacccaaaaccata 24367144  T

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