View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4050_low_22 (Length: 277)

Name: NF4050_low_22
Description: NF4050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4050_low_22
NF4050_low_22
[»] chr6 (12 HSPs)
chr6 (1-266)||(33388737-33389002)
chr6 (1-237)||(33272523-33272760)
chr6 (51-194)||(33401388-33401531)
chr6 (1-237)||(33286267-33286506)
chr6 (29-235)||(33359439-33359648)
chr6 (50-194)||(33263405-33263549)
chr6 (43-233)||(33305209-33305402)
chr6 (88-235)||(33058284-33058437)
chr6 (49-235)||(9167490-9167679)
chr6 (50-147)||(31561984-31562081)
chr6 (50-194)||(33643780-33643924)
chr6 (50-194)||(33410707-33410851)
[»] chr2 (1 HSPs)
chr2 (50-235)||(17439998-17440187)
[»] chr4 (6 HSPs)
chr4 (50-189)||(31503301-31503440)
chr4 (64-198)||(31149123-31149257)
chr4 (88-194)||(31158001-31158107)
chr4 (67-124)||(31033077-31033134)
chr4 (65-117)||(31478166-31478218)
chr4 (63-174)||(31527206-31527317)
[»] scaffold1408 (1 HSPs)
scaffold1408 (88-194)||(1396-1502)
[»] scaffold0428 (1 HSPs)
scaffold0428 (88-194)||(7142-7248)


Alignment Details
Target: chr6 (Bit Score: 254; Significance: 1e-141; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 33389002 - 33388737
Alignment:
1 agattgctcatcatcaagtggggtccgaatatcccaagtagcccatcgagtctttcaaacgcattaagatatgttgagtggaattattatcctttcaagt 100  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
33389002 agattactcatcatcaagtggggtccgaatatcccaagtagcccatcgagtctttcaaacacattaagatatgttgagtggaattattatcctttcaagt 33388903  T
101 atttgccaacaagttttcaccccagtgatcttgtagagttgatcttgatgtatagcgacatcaaacaactatggaagaacaagaaggtattatacatttg 200  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
33388902 atttgccatcaagttttcaccccagtgatcttgtagagttgatcttgatgtatagcgacatcaaacaactatggaagaacaagaaggtattatacatttg 33388803  T
201 attattaatgtttatcttagaaatataaacaaatttgtaatggttctatttttgttgttttttcat 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
33388802 attattaatgtttatcttagaaatataaacaaatttgtaatggttctatttttgttgttttttcat 33388737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 33272760 - 33272523
Alignment:
1 agattgctcatcatcaagtggggtccgaatatcccaagtagcccatcgagtctttcaaacgcattaagatatgttgagtggaattattatcctttcaagt 100  Q
    ||||||||||| |||||||| |||| |||||||||| |||| | |||||| |||||||| ||||||||||||||||||||| ||   |||||||||||||    
33272760 agattgctcataatcaagtgcggtcggaatatcccaggtagtctatcgagcctttcaaatgcattaagatatgttgagtgggatggatatcctttcaagt 33272661  T
101 atttgccaacaagttttcaccccagtgatcttgtagagttgatcttgatgtatagcgacatcaaacaactatggaagaacaagaaggta-ttatacattt 199  Q
     | | ||||||||||||||||||| ||| ||| |||| |||||||||||| ||||||||||||||||||||||||| ||||||||||||  |||| |||     
33272660 gtctaccaacaagttttcaccccaatgaccttatagaattgatcttgatgaatagcgacatcaaacaactatggaaaaacaagaaggtacctataaattc 33272561  T
200 gattattaatgtttatcttagaaatataaacaaatttg 237  Q
     |||||||||||||||||||||||||||||||||||||    
33272560 tattattaatgtttatcttagaaatataaacaaatttg 33272523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 51 - 194
Target Start/End: Complemental strand, 33401531 - 33401388
Alignment:
51 tctttcaaacgcattaagatatgttgagtggaattattatcctttcaagtatttgccaacaagttttcaccccagtgatcttgtagagttgatcttgatg 150  Q
    ||||||||||| ||||||||||||||| ||| || | ||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||  |    
33401531 tctttcaaacgaattaagatatgttgattggcatgaatatcctttcaagtatttgccaacaagttttcaccccaatgaacttgtagaattgatcttgtgg 33401432  T
151 tatagcgacatcaaacaactatggaagaacaagaaggtattata 194  Q
    | |||| |||| |||||||||||||| |||||||||||| ||||    
33401431 tgtagcaacattaaacaactatggaaaaacaagaaggtactata 33401388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 33286506 - 33286267
Alignment:
1 agattgctcatcatcaagtggggtccgaatatcccaagtagcccatcgagtctttcaaacgcattaagatatgttgagtggaattattatcctttcaagt 100  Q
    |||||||||||||||| |||||||  ||||||| |  | |||| || |||||||||||||  ||||||||||||| |||||| |   ||||||||||| |    
33286506 agattgctcatcatcatgtggggtgtgaatatctccggaagcctattgagtctttcaaacaaattaagatatgttcagtggactggatatcctttcaaat 33286407  T
101 atttgccaacaagttttcaccccagtgatcttgtagagttgatcttgatgtatagcgacatcaaacaactatggaagaacaagaaggtattatacatt-- 198  Q
    |||||||| ||| ||||||||||| ||| |||||||| |||||||||     |||| |||| |||||||||||||  || ||||||||| |||| |||      
33286406 atttgccatcaaattttcaccccaatgaacttgtagaattgatcttgcatagtagcaacattaaacaactatggagaaagaagaaggtactataaattat 33286307  T
199 -tgattattaatgtttatcttagaaatataaacaaatttg 237  Q
     | ||||| |||||| ||||||||||||||||||||||||    
33286306 cttattataaatgttcatcttagaaatataaacaaatttg 33286267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 29 - 235
Target Start/End: Complemental strand, 33359648 - 33359439
Alignment:
29 atatcccaagtagcccatcgagtctttcaaacgcattaagatatgttgagtggaattattatcctttcaagtatttgccaacaagttttcaccccagtga 128  Q
    ||||| |||| |||||| |||||||||||||||||||||||| | || ||||| |    ||||||| | |||||||||||||||||||| || ||| |||    
33359648 atatctcaagaagcccaacgagtctttcaaacgcattaagatttattcagtgggaggcatatccttgccagtatttgccaacaagttttaactccaatga 33359549  T
129 tcttgtagagttgatcttgatgtatagcgacatcaaacaactatggaagaacaagaaggtattatacatt---tgattattaatgtttatcttagaaata 225  Q
     |||||||| |||||||||| | | |||  ||| |||||||||||||| |||||||||||| |||| |||   | ||||||||||||||| |||||||||    
33359548 acttgtagaattgatcttgaagaaaagcagcattaaacaactatggaaaaacaagaaggtaatataaattctcttattattaatgtttattttagaaata 33359449  T
226 taaacaaatt 235  Q
    ||||| ||||    
33359448 taaaccaatt 33359439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 50 - 194
Target Start/End: Complemental strand, 33263549 - 33263405
Alignment:
50 gtctttcaaacgcattaagatatgttgagtggaattattatcctttcaagtatttgccaacaagttttcaccccagtgatcttgtagagttgatcttgat 149  Q
    |||||||||||  ||| ||||||||||||||| || | |||||||  |||||||||||| ||||||||||||||| ||| |||||||| ||||||||| |    
33263549 gtctttcaaacaaattgagatatgttgagtgggatgaatatccttcaaagtatttgccatcaagttttcaccccaatgaacttgtagaattgatcttggt 33263450  T
150 gtatagcgacatcaaacaactatggaagaacaagaaggtattata 194  Q
    | | ||| |||| | |||||||||||| |||||||||||| ||||    
33263449 gaaaagcaacattacacaactatggaaaaacaagaaggtactata 33263405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 43 - 233
Target Start/End: Complemental strand, 33305402 - 33305209
Alignment:
43 ccatcgagtctttcaaacgcattaagatatgttgagtggaattattatcctttcaagtatttgccaacaagttttcaccccagtgatcttgtagagttga 142  Q
    |||| |||| ||||||||  ||||| ||||||||| ||| || | |||||||| |||||||||||| ||| ||||||||||| ||| |||||||| ||||    
33305402 ccatggagtttttcaaacaaattaaaatatgttgattggcatgaatatccttttaagtatttgccatcaaattttcaccccaatgaacttgtagaattga 33305303  T
143 tcttgatgtatagcgacatcaaacaactatggaagaacaagaaggtattatacatt---tgattattaatgtttatcttagaaatataaacaaa 233  Q
    |||| | |   ||| | ||  ||||||||||||  |||||||||||| |||| |||   | |||||||||||||||||||||||||||||||||    
33305302 tcttaaagagcagcaaaattgaacaactatggacaaacaagaaggtactataaattctcttattattaatgtttatcttagaaatataaacaaa 33305209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 88 - 235
Target Start/End: Complemental strand, 33058437 - 33058284
Alignment:
88 tatcctttcaagtatttgccaacaagttttcaccccagtgatcttgtagagttgatcttgatgtatagcgacatcaaacaactatggaagaacaagaagg 187  Q
    ||||||| ||||||||||||| ||| ||||||||||| ||| |||||||| |||||||||| | | ||| |||| |||||||||||||| ||||||||||    
33058437 tatccttccaagtatttgccatcaaattttcaccccaatgaacttgtagaattgatcttgacggagagcaacattaaacaactatggaaaaacaagaagg 33058338  T
188 tattatacatt---tgattattaatgttt---atcttagaaatataaacaaatt 235  Q
    || |||| |||   | ||||||||| |||   ||||||||||||||||||||||    
33058337 tactataaattctattattattaatatttatcatcttagaaatataaacaaatt 33058284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 49 - 235
Target Start/End: Complemental strand, 9167679 - 9167490
Alignment:
49 agtctttcaaacgcattaagatatgttgagtggaattattatcctttcaagtatttgccaacaagttttcaccccagtgatcttgtagagttgatcttga 148  Q
    |||||||| |||| |||||||||| |||||||| ||   ||||||||||||||||||||| | ||||||||| ||| ||| |||||| |  |||||||||    
9167679 agtctttcgaacgaattaagatatcttgagtggtatcgatatcctttcaagtatttgccatcgagttttcacgccaatgaacttgtacaactgatcttga 9167580  T
149 tgtatagcgacatcaaacaactatggaagaacaagaaggtattataca---tttgattattaatgtttatcttagaaatataaacaaatt 235  Q
      |  ||| |||| |||||||||||||| ||||| |||||| |||| |   | | |||||||  |||||| |||||||||||||||||||    
9167579 actggagcaacattaaacaactatggaaaaacaaaaaggtactataaactctcttattattaccgtttattttagaaatataaacaaatt 9167490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 50 - 147
Target Start/End: Original strand, 31561984 - 31562081
Alignment:
50 gtctttcaaacgcattaagatatgttgagtggaattattatcctttcaagtatttgccaacaagttttcaccccagtgatcttgtagagttgatcttg 147  Q
    ||||||| |||  |||||||||||||||||||  | | ||||||||||||||||||||| ||||||||||||||  ||| |||||||| |||||||||    
31561984 gtctttcgaacaaattaagatatgttgagtggcttgaatatcctttcaagtatttgccatcaagttttcacccctatgaacttgtagaattgatcttg 31562081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 50 - 194
Target Start/End: Original strand, 33643780 - 33643924
Alignment:
50 gtctttcaaacgcattaagatatgttgagtggaattattatcctttcaagtatttgccaacaagttttcaccccagtgatcttgtagagttgatcttgat 149  Q
    |||||||||| | ||||||||||||||| ||| ||   |||||||||| || ||||||| ||| |||||| |||| | | |||||||| ||| ||||||     
33643780 gtctttcaaaggaattaagatatgttgactggcatatgtatcctttcatgtgtttgccatcaaattttcagcccaatcaacttgtagaattgttcttgaa 33643879  T
150 gtatagcgacatcaaacaactatggaagaacaagaaggtattata 194  Q
    | | ||| |||| | |||||||||||| |||||||||||| ||||    
33643880 gaagagcaacattagacaactatggaaaaacaagaaggtaatata 33643924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 50 - 194
Target Start/End: Complemental strand, 33410851 - 33410707
Alignment:
50 gtctttcaaacgcattaagatatgttgagtggaattattatcctttcaagtatttgccaacaagttttcaccccagtgatcttgtagagttgatcttgat 149  Q
    |||||||||||  |||||| ||| |||| ||| |  |||||||||||  | | ||||||  |||||||||||| | ||| ||||| || ||||||||||     
33410851 gtctttcaaacaaattaaggtattttgactgggagcattatcctttctgggaattgccattaagttttcaccctaatgaacttgttgaattgatcttgaa 33410752  T
150 gtatagcgacatcaaacaactatggaagaacaagaaggtattata 194  Q
    | |||||  | |||||||||||||||| | |||||||||| ||||    
33410751 gaatagcagcttcaaacaactatggaaaagcaagaaggtactata 33410707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 50 - 235
Target Start/End: Original strand, 17439998 - 17440187
Alignment:
50 gtctttcaaacgcattaagatatgttgagtggaattattatcctttcaagtatttgccaacaagttttcaccccagtgatcttgtagagttgatctt-ga 148  Q
    ||||||| |||  |||||||||||||||||||  | | ||||||||||||||||||||||||||||||||||||| ||| || ||||| ||||| || ||    
17439998 gtctttcgaacaaattaagatatgttgagtggcctaaatatcctttcaagtatttgccaacaagttttcaccccaatgaactagtagaattgattttgga 17440097  T
149 tgtatagcgacatcaaacaactatggaagaacaagaaggtattatacatt---tgatt-attaatgtttatcttagaaatataaacaaatt 235  Q
    ||   ||| |||| ||| | |||||||| ||||||||||||  ||| |||   | ||| ||||||||||||||| ||||||||||||||||    
17440098 tg-ggagcaacattaaaaacctatggaaaaacaagaaggtaccataaattctcttattaattaatgtttatctttgaaatataaacaaatt 17440187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 50 - 189
Target Start/End: Original strand, 31503301 - 31503440
Alignment:
50 gtctttcaaacgcattaagatatgttgagtggaattattatcctttcaagtatttgccaacaagttttcaccccagtgatcttgtagagttgatcttgat 149  Q
    ||||||| |||| ||||||||||||||| |||| | | ||||||||||||||||||||  |||||||||| || | | | ||||| |||||||||||||     
31503301 gtctttctaacgaattaagatatgttgaatggagtgaatatcctttcaagtatttgccgtcaagttttcagccaaatcaacttgttgagttgatcttgaa 31503400  T
150 gtatagcgacatcaaacaactatggaagaacaagaaggta 189  Q
    |  ||||  |||| ||||| ||||| |  |||||||||||    
31503401 gagtagcagcatcgaacaattatgggaagacaagaaggta 31503440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 64 - 198
Target Start/End: Complemental strand, 31149257 - 31149123
Alignment:
64 ttaagatatgttgagtggaattattatcctttcaagtatttgccaacaagttttcaccccagtgatcttgtagagttgatcttgatgtatagcgacatca 163  Q
    ||||||||||| |||||||||   ||||||||||||||||||||| |||||||||  || | | | ||||| || |||||||||| |||||||    |||    
31149257 ttaagatatgtcgagtggaatagatatcctttcaagtatttgccatcaagttttctgcctaatcaacttgtcgaattgatcttgaggtatagcagtgtca 31149158  T
164 aacaactatggaagaacaagaaggtattatacatt 198  Q
    |||| ||||||||  | ||||||||| ||||||||    
31149157 aacagctatggaaagataagaaggtactatacatt 31149123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 88 - 194
Target Start/End: Complemental strand, 31158107 - 31158001
Alignment:
88 tatcctttcaagtatttgccaacaagttttcaccccagtgatcttgtagagttgatcttgatgtatagcgacatcaaacaactatggaagaacaagaagg 187  Q
    ||||||||||||||||||||| || ||||||| |||| | | ||||| || |||||| ||| | |||||  | ||||||||||||||||  |||||||||    
31158107 tatcctttcaagtatttgccagcatgttttcagcccaatcaacttgttgaattgatcatgaggcatagcagcgtcaaacaactatggaaagacaagaagg 31158008  T
188 tattata 194  Q
    || ||||    
31158007 tactata 31158001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 124
Target Start/End: Complemental strand, 31033134 - 31033077
Alignment:
67 agatatgttgagtggaattattatcctttcaagtatttgccaacaagttttcacccca 124  Q
    |||||||||||||||| | | |||||||||| ||||||||| ||||||||||||||||    
31033134 agatatgttgagtggactgaatatcctttcatgtatttgcctacaagttttcacccca 31033077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 117
Target Start/End: Original strand, 31478166 - 31478218
Alignment:
65 taagatatgttgagtggaattattatcctttcaagtatttgccaacaagtttt 117  Q
    |||||||||||||||||| | | ||||||||||||||||||||| | ||||||    
31478166 taagatatgttgagtggagtgaatatcctttcaagtatttgccatcgagtttt 31478218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 63 - 174
Target Start/End: Complemental strand, 31527317 - 31527206
Alignment:
63 attaagatatgttgagtggaattattatcctttcaagtatttgccaacaagttttcaccccagtgatcttgtagagttgatcttgatgtatagcgacatc 162  Q
    |||||||||||||||||||    | |||||||||| |||||||||| |||||||||| |||    | ||||| ||||||||||||    |||||  ||||    
31527317 attaagatatgttgagtggcgggaatatcctttcatgtatttgccatcaagttttcaaccctaccaacttgttgagttgatcttggaagatagcagcatc 31527218  T
163 aaacaactatgg 174  Q
    ||||||||||||    
31527217 aaacaactatgg 31527206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1408 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold1408
Description:

Target: scaffold1408; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 88 - 194
Target Start/End: Complemental strand, 1502 - 1396
Alignment:
88 tatcctttcaagtatttgccaacaagttttcaccccagtgatcttgtagagttgatcttgatgtatagcgacatcaaacaactatggaagaacaagaagg 187  Q
    ||||||||||||||| ||||| |||||||||||||   ||| |||||||| ||||| ||| ||   |||  ||| |||||||||||||| ||||||||||    
1502 tatcctttcaagtatctgccatcaagttttcaccctgctgaacttgtagaattgattttggtgagaagctgcattaaacaactatggaaaaacaagaagg 1403  T
188 tattata 194  Q
    || ||||    
1402 tactata 1396  T

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Target: scaffold0428 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 88 - 194
Target Start/End: Complemental strand, 7248 - 7142
Alignment:
88 tatcctttcaagtatttgccaacaagttttcaccccagtgatcttgtagagttgatcttgatgtatagcgacatcaaacaactatggaagaacaagaagg 187  Q
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7248 tatcctttcaagtatctgccatcaagttttcaccctgctgaacttgtagaattgattttggtgagaagctgcattaaacaactatggaaaaacaagaagg 7149  T
188 tattata 194  Q
    || ||||    
7148 tactata 7142  T

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