View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4050_low_22 (Length: 277)
Name: NF4050_low_22
Description: NF4050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4050_low_22 |
 |  |
|
| [»] scaffold1408 (1 HSPs) |
 |  |  |
|
| [»] scaffold0428 (1 HSPs) |
 |  |  |
|
Alignment Details
Target: chr6 (Bit Score: 254; Significance: 1e-141; HSPs: 12)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 33389002 - 33388737
Alignment:
| Q |
1 |
agattgctcatcatcaagtggggtccgaatatcccaagtagcccatcgagtctttcaaacgcattaagatatgttgagtggaattattatcctttcaagt |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33389002 |
agattactcatcatcaagtggggtccgaatatcccaagtagcccatcgagtctttcaaacacattaagatatgttgagtggaattattatcctttcaagt |
33388903 |
T |
 |
| Q |
101 |
atttgccaacaagttttcaccccagtgatcttgtagagttgatcttgatgtatagcgacatcaaacaactatggaagaacaagaaggtattatacatttg |
200 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33388902 |
atttgccatcaagttttcaccccagtgatcttgtagagttgatcttgatgtatagcgacatcaaacaactatggaagaacaagaaggtattatacatttg |
33388803 |
T |
 |
| Q |
201 |
attattaatgtttatcttagaaatataaacaaatttgtaatggttctatttttgttgttttttcat |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33388802 |
attattaatgtttatcttagaaatataaacaaatttgtaatggttctatttttgttgttttttcat |
33388737 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 33272760 - 33272523
Alignment:
| Q |
1 |
agattgctcatcatcaagtggggtccgaatatcccaagtagcccatcgagtctttcaaacgcattaagatatgttgagtggaattattatcctttcaagt |
100 |
Q |
| |
|
||||||||||| |||||||| |||| |||||||||| |||| | |||||| |||||||| ||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
33272760 |
agattgctcataatcaagtgcggtcggaatatcccaggtagtctatcgagcctttcaaatgcattaagatatgttgagtgggatggatatcctttcaagt |
33272661 |
T |
 |
| Q |
101 |
atttgccaacaagttttcaccccagtgatcttgtagagttgatcttgatgtatagcgacatcaaacaactatggaagaacaagaaggta-ttatacattt |
199 |
Q |
| |
|
| | ||||||||||||||||||| ||| ||| |||| |||||||||||| ||||||||||||||||||||||||| |||||||||||| |||| ||| |
|
|
| T |
33272660 |
gtctaccaacaagttttcaccccaatgaccttatagaattgatcttgatgaatagcgacatcaaacaactatggaaaaacaagaaggtacctataaattc |
33272561 |
T |
 |
| Q |
200 |
gattattaatgtttatcttagaaatataaacaaatttg |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33272560 |
tattattaatgtttatcttagaaatataaacaaatttg |
33272523 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 51 - 194
Target Start/End: Complemental strand, 33401531 - 33401388
Alignment:
| Q |
51 |
tctttcaaacgcattaagatatgttgagtggaattattatcctttcaagtatttgccaacaagttttcaccccagtgatcttgtagagttgatcttgatg |
150 |
Q |
| |
|
||||||||||| ||||||||||||||| ||| || | ||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||| | |
|
|
| T |
33401531 |
tctttcaaacgaattaagatatgttgattggcatgaatatcctttcaagtatttgccaacaagttttcaccccaatgaacttgtagaattgatcttgtgg |
33401432 |
T |
 |
| Q |
151 |
tatagcgacatcaaacaactatggaagaacaagaaggtattata |
194 |
Q |
| |
|
| |||| |||| |||||||||||||| |||||||||||| |||| |
|
|
| T |
33401431 |
tgtagcaacattaaacaactatggaaaaacaagaaggtactata |
33401388 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 33286506 - 33286267
Alignment:
| Q |
1 |
agattgctcatcatcaagtggggtccgaatatcccaagtagcccatcgagtctttcaaacgcattaagatatgttgagtggaattattatcctttcaagt |
100 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||| | | |||| || ||||||||||||| ||||||||||||| |||||| | ||||||||||| | |
|
|
| T |
33286506 |
agattgctcatcatcatgtggggtgtgaatatctccggaagcctattgagtctttcaaacaaattaagatatgttcagtggactggatatcctttcaaat |
33286407 |
T |
 |
| Q |
101 |
atttgccaacaagttttcaccccagtgatcttgtagagttgatcttgatgtatagcgacatcaaacaactatggaagaacaagaaggtattatacatt-- |
198 |
Q |
| |
|
|||||||| ||| ||||||||||| ||| |||||||| ||||||||| |||| |||| ||||||||||||| || ||||||||| |||| ||| |
|
|
| T |
33286406 |
atttgccatcaaattttcaccccaatgaacttgtagaattgatcttgcatagtagcaacattaaacaactatggagaaagaagaaggtactataaattat |
33286307 |
T |
 |
| Q |
199 |
-tgattattaatgtttatcttagaaatataaacaaatttg |
237 |
Q |
| |
|
| ||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
33286306 |
cttattataaatgttcatcttagaaatataaacaaatttg |
33286267 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 29 - 235
Target Start/End: Complemental strand, 33359648 - 33359439
Alignment:
| Q |
29 |
atatcccaagtagcccatcgagtctttcaaacgcattaagatatgttgagtggaattattatcctttcaagtatttgccaacaagttttcaccccagtga |
128 |
Q |
| |
|
||||| |||| |||||| |||||||||||||||||||||||| | || ||||| | ||||||| | |||||||||||||||||||| || ||| ||| |
|
|
| T |
33359648 |
atatctcaagaagcccaacgagtctttcaaacgcattaagatttattcagtgggaggcatatccttgccagtatttgccaacaagttttaactccaatga |
33359549 |
T |
 |
| Q |
129 |
tcttgtagagttgatcttgatgtatagcgacatcaaacaactatggaagaacaagaaggtattatacatt---tgattattaatgtttatcttagaaata |
225 |
Q |
| |
|
|||||||| |||||||||| | | ||| ||| |||||||||||||| |||||||||||| |||| ||| | ||||||||||||||| ||||||||| |
|
|
| T |
33359548 |
acttgtagaattgatcttgaagaaaagcagcattaaacaactatggaaaaacaagaaggtaatataaattctcttattattaatgtttattttagaaata |
33359449 |
T |
 |
| Q |
226 |
taaacaaatt |
235 |
Q |
| |
|
||||| |||| |
|
|
| T |
33359448 |
taaaccaatt |
33359439 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 50 - 194
Target Start/End: Complemental strand, 33263549 - 33263405
Alignment:
| Q |
50 |
gtctttcaaacgcattaagatatgttgagtggaattattatcctttcaagtatttgccaacaagttttcaccccagtgatcttgtagagttgatcttgat |
149 |
Q |
| |
|
||||||||||| ||| ||||||||||||||| || | ||||||| |||||||||||| ||||||||||||||| ||| |||||||| ||||||||| | |
|
|
| T |
33263549 |
gtctttcaaacaaattgagatatgttgagtgggatgaatatccttcaaagtatttgccatcaagttttcaccccaatgaacttgtagaattgatcttggt |
33263450 |
T |
 |
| Q |
150 |
gtatagcgacatcaaacaactatggaagaacaagaaggtattata |
194 |
Q |
| |
|
| | ||| |||| | |||||||||||| |||||||||||| |||| |
|
|
| T |
33263449 |
gaaaagcaacattacacaactatggaaaaacaagaaggtactata |
33263405 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 43 - 233
Target Start/End: Complemental strand, 33305402 - 33305209
Alignment:
| Q |
43 |
ccatcgagtctttcaaacgcattaagatatgttgagtggaattattatcctttcaagtatttgccaacaagttttcaccccagtgatcttgtagagttga |
142 |
Q |
| |
|
|||| |||| |||||||| ||||| ||||||||| ||| || | |||||||| |||||||||||| ||| ||||||||||| ||| |||||||| |||| |
|
|
| T |
33305402 |
ccatggagtttttcaaacaaattaaaatatgttgattggcatgaatatccttttaagtatttgccatcaaattttcaccccaatgaacttgtagaattga |
33305303 |
T |
 |
| Q |
143 |
tcttgatgtatagcgacatcaaacaactatggaagaacaagaaggtattatacatt---tgattattaatgtttatcttagaaatataaacaaa |
233 |
Q |
| |
|
|||| | | ||| | || |||||||||||| |||||||||||| |||| ||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
33305302 |
tcttaaagagcagcaaaattgaacaactatggacaaacaagaaggtactataaattctcttattattaatgtttatcttagaaatataaacaaa |
33305209 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 88 - 235
Target Start/End: Complemental strand, 33058437 - 33058284
Alignment:
| Q |
88 |
tatcctttcaagtatttgccaacaagttttcaccccagtgatcttgtagagttgatcttgatgtatagcgacatcaaacaactatggaagaacaagaagg |
187 |
Q |
| |
|
||||||| ||||||||||||| ||| ||||||||||| ||| |||||||| |||||||||| | | ||| |||| |||||||||||||| |||||||||| |
|
|
| T |
33058437 |
tatccttccaagtatttgccatcaaattttcaccccaatgaacttgtagaattgatcttgacggagagcaacattaaacaactatggaaaaacaagaagg |
33058338 |
T |
 |
| Q |
188 |
tattatacatt---tgattattaatgttt---atcttagaaatataaacaaatt |
235 |
Q |
| |
|
|| |||| ||| | ||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
33058337 |
tactataaattctattattattaatatttatcatcttagaaatataaacaaatt |
33058284 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 49 - 235
Target Start/End: Complemental strand, 9167679 - 9167490
Alignment:
| Q |
49 |
agtctttcaaacgcattaagatatgttgagtggaattattatcctttcaagtatttgccaacaagttttcaccccagtgatcttgtagagttgatcttga |
148 |
Q |
| |
|
|||||||| |||| |||||||||| |||||||| || ||||||||||||||||||||| | ||||||||| ||| ||| |||||| | ||||||||| |
|
|
| T |
9167679 |
agtctttcgaacgaattaagatatcttgagtggtatcgatatcctttcaagtatttgccatcgagttttcacgccaatgaacttgtacaactgatcttga |
9167580 |
T |
 |
| Q |
149 |
tgtatagcgacatcaaacaactatggaagaacaagaaggtattataca---tttgattattaatgtttatcttagaaatataaacaaatt |
235 |
Q |
| |
|
| ||| |||| |||||||||||||| ||||| |||||| |||| | | | ||||||| |||||| ||||||||||||||||||| |
|
|
| T |
9167579 |
actggagcaacattaaacaactatggaaaaacaaaaaggtactataaactctcttattattaccgtttattttagaaatataaacaaatt |
9167490 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 50 - 147
Target Start/End: Original strand, 31561984 - 31562081
Alignment:
| Q |
50 |
gtctttcaaacgcattaagatatgttgagtggaattattatcctttcaagtatttgccaacaagttttcaccccagtgatcttgtagagttgatcttg |
147 |
Q |
| |
|
||||||| ||| ||||||||||||||||||| | | ||||||||||||||||||||| |||||||||||||| ||| |||||||| ||||||||| |
|
|
| T |
31561984 |
gtctttcgaacaaattaagatatgttgagtggcttgaatatcctttcaagtatttgccatcaagttttcacccctatgaacttgtagaattgatcttg |
31562081 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 50 - 194
Target Start/End: Original strand, 33643780 - 33643924
Alignment:
| Q |
50 |
gtctttcaaacgcattaagatatgttgagtggaattattatcctttcaagtatttgccaacaagttttcaccccagtgatcttgtagagttgatcttgat |
149 |
Q |
| |
|
|||||||||| | ||||||||||||||| ||| || |||||||||| || ||||||| ||| |||||| |||| | | |||||||| ||| |||||| |
|
|
| T |
33643780 |
gtctttcaaaggaattaagatatgttgactggcatatgtatcctttcatgtgtttgccatcaaattttcagcccaatcaacttgtagaattgttcttgaa |
33643879 |
T |
 |
| Q |
150 |
gtatagcgacatcaaacaactatggaagaacaagaaggtattata |
194 |
Q |
| |
|
| | ||| |||| | |||||||||||| |||||||||||| |||| |
|
|
| T |
33643880 |
gaagagcaacattagacaactatggaaaaacaagaaggtaatata |
33643924 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 50 - 194
Target Start/End: Complemental strand, 33410851 - 33410707
Alignment:
| Q |
50 |
gtctttcaaacgcattaagatatgttgagtggaattattatcctttcaagtatttgccaacaagttttcaccccagtgatcttgtagagttgatcttgat |
149 |
Q |
| |
|
||||||||||| |||||| ||| |||| ||| | ||||||||||| | | |||||| |||||||||||| | ||| ||||| || |||||||||| |
|
|
| T |
33410851 |
gtctttcaaacaaattaaggtattttgactgggagcattatcctttctgggaattgccattaagttttcaccctaatgaacttgttgaattgatcttgaa |
33410752 |
T |
 |
| Q |
150 |
gtatagcgacatcaaacaactatggaagaacaagaaggtattata |
194 |
Q |
| |
|
| ||||| | |||||||||||||||| | |||||||||| |||| |
|
|
| T |
33410751 |
gaatagcagcttcaaacaactatggaaaagcaagaaggtactata |
33410707 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 50 - 235
Target Start/End: Original strand, 17439998 - 17440187
Alignment:
| Q |
50 |
gtctttcaaacgcattaagatatgttgagtggaattattatcctttcaagtatttgccaacaagttttcaccccagtgatcttgtagagttgatctt-ga |
148 |
Q |
| |
|
||||||| ||| ||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||| ||| || ||||| ||||| || || |
|
|
| T |
17439998 |
gtctttcgaacaaattaagatatgttgagtggcctaaatatcctttcaagtatttgccaacaagttttcaccccaatgaactagtagaattgattttgga |
17440097 |
T |
 |
| Q |
149 |
tgtatagcgacatcaaacaactatggaagaacaagaaggtattatacatt---tgatt-attaatgtttatcttagaaatataaacaaatt |
235 |
Q |
| |
|
|| ||| |||| ||| | |||||||| |||||||||||| ||| ||| | ||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
17440098 |
tg-ggagcaacattaaaaacctatggaaaaacaagaaggtaccataaattctcttattaattaatgtttatctttgaaatataaacaaatt |
17440187 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 50 - 189
Target Start/End: Original strand, 31503301 - 31503440
Alignment:
| Q |
50 |
gtctttcaaacgcattaagatatgttgagtggaattattatcctttcaagtatttgccaacaagttttcaccccagtgatcttgtagagttgatcttgat |
149 |
Q |
| |
|
||||||| |||| ||||||||||||||| |||| | | |||||||||||||||||||| |||||||||| || | | | ||||| ||||||||||||| |
|
|
| T |
31503301 |
gtctttctaacgaattaagatatgttgaatggagtgaatatcctttcaagtatttgccgtcaagttttcagccaaatcaacttgttgagttgatcttgaa |
31503400 |
T |
 |
| Q |
150 |
gtatagcgacatcaaacaactatggaagaacaagaaggta |
189 |
Q |
| |
|
| |||| |||| ||||| ||||| | ||||||||||| |
|
|
| T |
31503401 |
gagtagcagcatcgaacaattatgggaagacaagaaggta |
31503440 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 64 - 198
Target Start/End: Complemental strand, 31149257 - 31149123
Alignment:
| Q |
64 |
ttaagatatgttgagtggaattattatcctttcaagtatttgccaacaagttttcaccccagtgatcttgtagagttgatcttgatgtatagcgacatca |
163 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||||||||||||| ||||||||| || | | | ||||| || |||||||||| ||||||| ||| |
|
|
| T |
31149257 |
ttaagatatgtcgagtggaatagatatcctttcaagtatttgccatcaagttttctgcctaatcaacttgtcgaattgatcttgaggtatagcagtgtca |
31149158 |
T |
 |
| Q |
164 |
aacaactatggaagaacaagaaggtattatacatt |
198 |
Q |
| |
|
|||| |||||||| | ||||||||| |||||||| |
|
|
| T |
31149157 |
aacagctatggaaagataagaaggtactatacatt |
31149123 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 88 - 194
Target Start/End: Complemental strand, 31158107 - 31158001
Alignment:
| Q |
88 |
tatcctttcaagtatttgccaacaagttttcaccccagtgatcttgtagagttgatcttgatgtatagcgacatcaaacaactatggaagaacaagaagg |
187 |
Q |
| |
|
||||||||||||||||||||| || ||||||| |||| | | ||||| || |||||| ||| | ||||| | |||||||||||||||| ||||||||| |
|
|
| T |
31158107 |
tatcctttcaagtatttgccagcatgttttcagcccaatcaacttgttgaattgatcatgaggcatagcagcgtcaaacaactatggaaagacaagaagg |
31158008 |
T |
 |
| Q |
188 |
tattata |
194 |
Q |
| |
|
|| |||| |
|
|
| T |
31158007 |
tactata |
31158001 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 124
Target Start/End: Complemental strand, 31033134 - 31033077
Alignment:
| Q |
67 |
agatatgttgagtggaattattatcctttcaagtatttgccaacaagttttcacccca |
124 |
Q |
| |
|
|||||||||||||||| | | |||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
31033134 |
agatatgttgagtggactgaatatcctttcatgtatttgcctacaagttttcacccca |
31033077 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 117
Target Start/End: Original strand, 31478166 - 31478218
Alignment:
| Q |
65 |
taagatatgttgagtggaattattatcctttcaagtatttgccaacaagtttt |
117 |
Q |
| |
|
|||||||||||||||||| | | ||||||||||||||||||||| | |||||| |
|
|
| T |
31478166 |
taagatatgttgagtggagtgaatatcctttcaagtatttgccatcgagtttt |
31478218 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 63 - 174
Target Start/End: Complemental strand, 31527317 - 31527206
Alignment:
| Q |
63 |
attaagatatgttgagtggaattattatcctttcaagtatttgccaacaagttttcaccccagtgatcttgtagagttgatcttgatgtatagcgacatc |
162 |
Q |
| |
|
||||||||||||||||||| | |||||||||| |||||||||| |||||||||| ||| | ||||| |||||||||||| ||||| |||| |
|
|
| T |
31527317 |
attaagatatgttgagtggcgggaatatcctttcatgtatttgccatcaagttttcaaccctaccaacttgttgagttgatcttggaagatagcagcatc |
31527218 |
T |
 |
| Q |
163 |
aaacaactatgg |
174 |
Q |
| |
|
|||||||||||| |
|
|
| T |
31527217 |
aaacaactatgg |
31527206 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1408 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold1408
Description:
Target: scaffold1408; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 88 - 194
Target Start/End: Complemental strand, 1502 - 1396
Alignment:
| Q |
88 |
tatcctttcaagtatttgccaacaagttttcaccccagtgatcttgtagagttgatcttgatgtatagcgacatcaaacaactatggaagaacaagaagg |
187 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||| ||| |||||||| ||||| ||| || ||| ||| |||||||||||||| |||||||||| |
|
|
| T |
1502 |
tatcctttcaagtatctgccatcaagttttcaccctgctgaacttgtagaattgattttggtgagaagctgcattaaacaactatggaaaaacaagaagg |
1403 |
T |
 |
| Q |
188 |
tattata |
194 |
Q |
| |
|
|| |||| |
|
|
| T |
1402 |
tactata |
1396 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 88 - 194
Target Start/End: Complemental strand, 7248 - 7142
Alignment:
| Q |
88 |
tatcctttcaagtatttgccaacaagttttcaccccagtgatcttgtagagttgatcttgatgtatagcgacatcaaacaactatggaagaacaagaagg |
187 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||| ||| |||||||| ||||| ||| || ||| ||| |||||||||||||| |||||||||| |
|
|
| T |
7248 |
tatcctttcaagtatctgccatcaagttttcaccctgctgaacttgtagaattgattttggtgagaagctgcattaaacaactatggaaaaacaagaagg |
7149 |
T |
 |
| Q |
188 |
tattata |
194 |
Q |
| |
|
|| |||| |
|
|
| T |
7148 |
tactata |
7142 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University