View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4050_low_23 (Length: 272)
Name: NF4050_low_23
Description: NF4050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4050_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 86; Significance: 4e-41; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 18 - 107
Target Start/End: Complemental strand, 41388948 - 41388859
Alignment:
| Q |
18 |
gtaataatcttagaaaacagtatccttcttcatgaacctgtcacaacctacaacaagtcaatagagattgattttatgaattagtcaacc |
107 |
Q |
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| T |
41388948 |
gtaataatcttagaaaacagtatccttcttcatgaacctgtcaaaacctacaacaagtcaatagagattgattttatgaattagtcaacc |
41388859 |
T |
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Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 181 - 263
Target Start/End: Complemental strand, 41388785 - 41388703
Alignment:
| Q |
181 |
gaggagttatgagaaggtaccaattcatgagaaataagtgaagtaatgaaaggaaaaaagcatagataggattgatgatgatg |
263 |
Q |
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| T |
41388785 |
gaggagttatgagaaggtaccaattcatgagaaataagtgaagtaatgaaaggaaaaaagcatagataggattgatgatgatg |
41388703 |
T |
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