View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4050_low_24 (Length: 266)
Name: NF4050_low_24
Description: NF4050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4050_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 48531853 - 48531602
Alignment:
| Q |
1 |
tgtttgacttgaaaaaggactgcaaattatgttcattctagtcttgtaattgtatatgttgggtgtttagttgtacttaaaaagcatgttggtgtgccag |
100 |
Q |
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| T |
48531853 |
tgtttgacttgaaaaaggactgcaaattatgttcattctagtcttgtaattgtatatgttgggtgtttagttgtacttaaaaagcatgttggtgtgccat |
48531754 |
T |
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| Q |
101 |
attcttggtaacatatgatttgtatcatctaagactttgagcagacaaacctgttcacctatcacgtcttgtttgcaagagc-gttgtatttatgagata |
199 |
Q |
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| T |
48531753 |
attcttggtaacaaatgatttgtatcatataagactttgagcagacaaacctgttcacctatcacgtcttgtttgcaagagcatttgtatttatgagata |
48531654 |
T |
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| Q |
200 |
tgagaagctaagagaaaacaaccttgaatgagattgagaggaagtggtgttg |
251 |
Q |
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| T |
48531653 |
tgagaagctaagagaaaacaaccttgaatgagattgagaggaagtggtgttg |
48531602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 48529092 - 48528882
Alignment:
| Q |
1 |
tgtttgacttgaaaaaggactgcaaattatgtt-cattctagtcttgtaattgtatatgttgggtgtttagttgtacttaaaaagcatgttggtgtgcca |
99 |
Q |
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| T |
48529092 |
tgtttgacttgaaaaagggctgcaaattatgtttcattctagtcttgtaattgtatatgtttggtgtttagttgtatttaaaaagcatgttggtgtgcca |
48528993 |
T |
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| Q |
100 |
gattcttggtaacatatgatttgtatcatctaagactttgagcagacaaacctgttcacctatcacgtcttgtttgcaagagcgttgtatttatgagata |
199 |
Q |
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||||| ||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
48528992 |
tattctaggtaacaaatgatttgtatcatctaagactttgagcagacagaactgttcacctatcacgtcttgtttgcaagagcattgtatttatgagata |
48528893 |
T |
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| Q |
200 |
tgagaagctaa |
210 |
Q |
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| T |
48528892 |
tgagaagctaa |
48528882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 258
Target Start/End: Complemental strand, 5341793 - 5341743
Alignment:
| Q |
208 |
taagagaaaacaaccttgaatgagattgagaggaagtggtgttgatgatgt |
258 |
Q |
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||||||||||| |||||||| |||| |||||||||||| ||||| |||||| |
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| T |
5341793 |
taagagaaaacgaccttgaaagagaatgagaggaagtgatgttggtgatgt |
5341743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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