View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4050_low_25 (Length: 265)
Name: NF4050_low_25
Description: NF4050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4050_low_25 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 183; Significance: 4e-99; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 45 - 250
Target Start/End: Complemental strand, 48531808 - 48531602
Alignment:
| Q |
45 |
gtaattgtatatgttgggtgtttagttgtacttaaaaagcatgttggtgtgccagattcttggtaacatatgatttgtatcatctaagactttgagcaga |
144 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
48531808 |
gtaattgtatatgttgggtgtttagttgtacttaaaaagcatgttggtgtgccatattcttggtaacaaatgatttgtatcatataagactttgagcaga |
48531709 |
T |
|
| Q |
145 |
caaacctgttcacctatcacgtcttgtttgcaagagc-gttgtatttatgagatatgagaagctaagagaaaacaaccttgaatgagattgagaggaagt |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48531708 |
caaacctgttcacctatcacgtcttgtttgcaagagcatttgtatttatgagatatgagaagctaagagaaaacaaccttgaatgagattgagaggaagt |
48531609 |
T |
|
| Q |
244 |
ggtgttg |
250 |
Q |
| |
|
||||||| |
|
|
| T |
48531608 |
ggtgttg |
48531602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 45 - 209
Target Start/End: Complemental strand, 48529046 - 48528882
Alignment:
| Q |
45 |
gtaattgtatatgttgggtgtttagttgtacttaaaaagcatgttggtgtgccagattcttggtaacatatgatttgtatcatctaagactttgagcaga |
144 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
48529046 |
gtaattgtatatgtttggtgtttagttgtatttaaaaagcatgttggtgtgccatattctaggtaacaaatgatttgtatcatctaagactttgagcaga |
48528947 |
T |
|
| Q |
145 |
caaacctgttcacctatcacgtcttgtttgcaagagcgttgtatttatgagatatgagaagctaa |
209 |
Q |
| |
|
|| | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
48528946 |
cagaactgttcacctatcacgtcttgtttgcaagagcattgtatttatgagatatgagaagctaa |
48528882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 48529068 - 48529117
Alignment:
| Q |
1 |
ttgcagtcctttttcaagtcaaacatgtttctgttattggcaaagtaatt |
50 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
48529068 |
ttgcagccctttttcaagtcaaacatgtttttgttattggcaaagtaatt |
48529117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 48531829 - 48531858
Alignment:
| Q |
1 |
ttgcagtcctttttcaagtcaaacatgttt |
30 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
48531829 |
ttgcagtcctttttcaagtcaaacatgttt |
48531858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 257
Target Start/End: Complemental strand, 5341793 - 5341743
Alignment:
| Q |
207 |
taagagaaaacaaccttgaatgagattgagaggaagtggtgttgatgatgt |
257 |
Q |
| |
|
||||||||||| |||||||| |||| |||||||||||| ||||| |||||| |
|
|
| T |
5341793 |
taagagaaaacgaccttgaaagagaatgagaggaagtgatgttggtgatgt |
5341743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University