View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4050_low_27 (Length: 249)
Name: NF4050_low_27
Description: NF4050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4050_low_27 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 13 - 249
Target Start/End: Original strand, 3807616 - 3807846
Alignment:
| Q |
13 |
ttctcccctctctataatgctactatagtctttttaatactactccacttgaaactttcgcattccctacacgccacacgctaatattaatactatacta |
112 |
Q |
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| T |
3807616 |
ttctcccctctctataatgctactatagtctttttaatactactccacttgaaactttcgcattccctacacgccacacgctaatattaatactatact- |
3807714 |
T |
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| Q |
113 |
ctactatataatcctcttataagtgcagacacaaatgcaaatcattacttatactaatccttttacaatgggtcacaatgcaaatactctcaaatcgtta |
212 |
Q |
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| T |
3807715 |
-----atataatcctcttataagtgcagacacaaatgcaaatcattacttatactaatccttttacaatgggtcacaatgcaaatactctcaaatcgtta |
3807809 |
T |
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| Q |
213 |
ctgctattatcacttgtgttatgtcatgttttctcct |
249 |
Q |
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| T |
3807810 |
ctgctattatcacttgtgttatgtcatgttttctcct |
3807846 |
T |
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