View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4050_low_28 (Length: 248)
Name: NF4050_low_28
Description: NF4050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4050_low_28 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 16 - 248
Target Start/End: Complemental strand, 49871035 - 49870803
Alignment:
| Q |
16 |
cagttggagttttccaaaactgcaaactcgtcgtcagaaaaccaatggcaaatcaacaatgcatggtgacagcaggaggaagaaccaatgttgacagtgt |
115 |
Q |
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| T |
49871035 |
cagttggagttttccaaaactgcaaactcatcgttagaaaaccaatggcaactcaacaatgcatggtgacagcaggaggaagaaccaaagttgacagtgt |
49870936 |
T |
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| Q |
116 |
atccgcccttgttttccaaaactgccatttcaccggggaacccgaagtacttaccatgcaacccaagatagcttatttgggaagaccatggagaaacttc |
215 |
Q |
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| T |
49870935 |
atccgcccttgttttccaaaactgccatttcaccggggaacccgaagttcttaccatgcaacccaagatagcttatttgggaagaccatggagaaacttc |
49870836 |
T |
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| Q |
216 |
tccaaggttgttatcgtggattctctcattgat |
248 |
Q |
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| T |
49870835 |
tccaaggttgttatcgtggattctctcattgat |
49870803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 248
Target Start/End: Complemental strand, 49865096 - 49864866
Alignment:
| Q |
18 |
gttggagttttccaaaactgcaaactcgtcgtcagaaaaccaatggcaaatcaacaatgcatggtgacagcaggaggaagaaccaatgttgacagtgtat |
117 |
Q |
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| T |
49865096 |
gttggagttttccaaaactgcaagctcgtcgttagaaaaccaatggcaaatcaacaatgcatggtgacagcaggaggaagaaccaaagttgacagtgtat |
49864997 |
T |
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| Q |
118 |
ccgcccttgttttccaaaactgccatttcaccggggaacccgaagtacttaccatgcaacccaagatagcttatttgggaagaccatggagaaacttctc |
217 |
Q |
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| T |
49864996 |
ccgcccttgttttccaaaactgtcatttcaccggggaacccgaagttcttaccatgcaacccaagatagcttatttgggaagaccatggagaaatttctc |
49864897 |
T |
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| Q |
218 |
caaggttgttatcgtggattctctcattgat |
248 |
Q |
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| T |
49864896 |
caaggttgttatcgtggattctctcattgat |
49864866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 99
Target Start/End: Complemental strand, 91789 - 91717
Alignment:
| Q |
27 |
ttccaaaactgcaaactcgtcgtcagaaaaccaatggcaaatcaacaatgcatggtgacagcaggaggaagaa |
99 |
Q |
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| T |
91789 |
ttccaaaactgcaaattcgtggtccgaaagcctatgtcaaaccaacaatgcattgtgaccgcacaaggaagaa |
91717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 99
Target Start/End: Complemental strand, 37154697 - 37154625
Alignment:
| Q |
27 |
ttccaaaactgcaaactcgtcgtcagaaaaccaatggcaaatcaacaatgcatggtgacagcaggaggaagaa |
99 |
Q |
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| T |
37154697 |
ttccaaaactgcaaattcgtggtccgaaagcctatgtcaaaccaacaatgcattgtgaccgcacaaggaagaa |
37154625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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