View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4050_low_3 (Length: 718)
Name: NF4050_low_3
Description: NF4050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4050_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 384 - 709
Target Start/End: Original strand, 45672714 - 45673036
Alignment:
| Q |
384 |
tgattgaaactgaccctttgaacataagaagaaggcatcaaagatcgaagcacattcaagtattcattcatttgttttcttcgattgcgttcaacagtaa |
483 |
Q |
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| T |
45672714 |
tgattgaaactgaccctttgaacataagaagaaggcatcaaagatcgaagcacattcaagtactcattcatttgttttcttcgattgcgttcaacagtaa |
45672813 |
T |
|
| Q |
484 |
tatgagtcatcctttgattttcaatctcttctttgttctttgcactcttgatacgacgacgctttctcctacacgatgctgttactgttgtagcttcttc |
583 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |
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| T |
45672814 |
tatgagtcatcctttgattttcaatctcctctttgttctttgcactcttgatacgacgacgctttctcctacacgatgctgttac---tgtagcttcctc |
45672910 |
T |
|
| Q |
584 |
cacggtggaagaaggaggtgctgtgatagtttgatcaacggtgcagatttcaggagaggaagagtgtgaatattcccattgatgatcccagtttgcatgg |
683 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45672911 |
catggtggaagaaggaggtgctgtgatagtttgatcaacggtgcagatttcaggagaggaagagtgtgaatattcccattgatgatcccagtttgcatgg |
45673010 |
T |
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| Q |
684 |
agattttgttgttcattgttgatgat |
709 |
Q |
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| T |
45673011 |
agattttgttgttcattgttgatgat |
45673036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 20 - 319
Target Start/End: Original strand, 45672329 - 45672649
Alignment:
| Q |
20 |
agtacttccaaacaacctaaagttcacccaaaaatgacacttccatagatttgcatttatatgtccaatttttattgagtgttagctaaatagcccacaa |
119 |
Q |
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| T |
45672329 |
agtacttccaaacaacctaaagttcacccaaaaatgacacttccatagatttgcatttatatgtccaatttttattgagtgttagctaaatagcccacaa |
45672428 |
T |
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| Q |
120 |
ttctttttgttagcttccatctttcctctatcataagtaaaacaaactataaacaaataaatatcatttaacctacccacatacattc------------ |
207 |
Q |
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| T |
45672429 |
ttctttttgttagcttccatctttcctctatcataagtaaaacaaactataaacaaataaatatcatttaacctacccacatacattcaaaatgaaaatt |
45672528 |
T |
|
| Q |
208 |
---------aaaatgaaaatgtaattagaaagttaacgggccataattaagtaaatttnnnnnnntgaaaatgtgattagttgagaactcatctcatgtc |
298 |
Q |
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| T |
45672529 |
gaagggaaaaaaatgaaaatgtaattagaaagttaacgggccataattaagtaaatttaaaaaaatgaaaatgtgattagttgagaactcatctcatgtc |
45672628 |
T |
|
| Q |
299 |
atatcatgttatgtcatgctc |
319 |
Q |
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||||||||||||||||||||| |
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| T |
45672629 |
atatcatgttatgtcatgctc |
45672649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 396 - 496
Target Start/End: Original strand, 27300880 - 27300980
Alignment:
| Q |
396 |
accctttgaacataagaagaaggcatcaaagatcgaagcacattcaagtattcattcatttgttttcttcgattgcgttcaacagtaatatgagtcatcc |
495 |
Q |
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|||||||| |||||||||| ||||||||| ||| || | || | ||| |||||||| ||||||||||||||||| ||||| | ||| |||||||||| |
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| T |
27300880 |
accctttgtacataagaaggaggcatcaaggatttgaggatatcaaggtactcattcatctgttttcttcgattgcgctcaactgcaatgtgagtcatcc |
27300979 |
T |
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| Q |
496 |
t |
496 |
Q |
| |
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| |
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| T |
27300980 |
t |
27300980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 447 - 520
Target Start/End: Original strand, 36676441 - 36676514
Alignment:
| Q |
447 |
tcattcatttgttttcttcgattgcgttcaacagtaatatgagtcatcctttgattttcaatctcttctttgtt |
520 |
Q |
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|||||||| || ||||||| ||| || ||||||| ||| |||||||| || ||||| ||||| ||||||||||| |
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| T |
36676441 |
tcattcatctgctttcttctattacgctcaacagcaatgtgagtcattctctgattctcaatttcttctttgtt |
36676514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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