View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4050_low_35 (Length: 224)
Name: NF4050_low_35
Description: NF4050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4050_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 163; Significance: 3e-87; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 9 - 208
Target Start/End: Complemental strand, 34822657 - 34822456
Alignment:
| Q |
9 |
gtcgaagaatattacttgttacaggtgaaatcagaagcttggcaaatgcccttccatttgcttggtggtggactatatcctttatcgttgaaactttctg |
108 |
Q |
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| T |
34822657 |
gtcgaagcatattacttgttacaggcgaaatcagaagcttggcaaatgcccttccatttgcttggtggtggactatattctttatcgttgaaactttctg |
34822558 |
T |
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| Q |
109 |
attccggccaaattccagaatcaatgattccaattatggcatcacattcat--tgtactctctccacgtattcaggaaatcctataaagtcccaagatct |
206 |
Q |
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| T |
34822557 |
attccggccaaattccagaatcaatgattccagttatgacatcacattcattgtgttctctctccaagtattcaggaaatcctataaagtcccaagatct |
34822458 |
T |
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| Q |
207 |
tg |
208 |
Q |
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|| |
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| T |
34822457 |
tg |
34822456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 103
Target Start/End: Original strand, 34712334 - 34712417
Alignment:
| Q |
20 |
ttacttgttacaggtgaaatcagaagcttggcaaatgcccttccatttgcttggtggtggactatatcctttatcgttgaaact |
103 |
Q |
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| T |
34712334 |
ttacttgttgcaggtgaaattgtaagtctggcaaattcccttccatttacttggaggtggactaaacccttcatcgttgaaact |
34712417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 38 - 133
Target Start/End: Original strand, 27972929 - 27973024
Alignment:
| Q |
38 |
atcagaagcttggcaaatgcccttccatttgcttggtggtggactatatcctttatcgttgaaactttctgattccggccaaattccagaatcaat |
133 |
Q |
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| T |
27972929 |
atcagaagtctggcacgtgcccttccatttggatggtggtggactgaaacctttatcgttgaaactttcggactctggccaaattccagaatcaat |
27973024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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