View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4050_low_4 (Length: 654)
Name: NF4050_low_4
Description: NF4050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4050_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 533; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 28 - 636
Target Start/End: Original strand, 27643059 - 27643667
Alignment:
| Q |
28 |
aatgcaattcaacgttggtagaaggatatgagtttcatctccctcagcttagccacccagaatctgatactcttaaacgtatctgcatactcaaagaacc |
127 |
Q |
| |
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|||||||||||| ||| ||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27643059 |
aatgcaattcaatgtttgtagacgggtatgagtttcatctccctcaacttagccacccagaatctgatactcttaaacgtatctgcatactcaaagaacc |
27643158 |
T |
|
| Q |
128 |
catagttcttactcttgttcatactagatacatgttgaaactcaaaccgcagaaatggcagtgttgcttcaaaggaagcaatttcctccaatttggtctt |
227 |
Q |
| |
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|||| | |||||| |||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
27643159 |
cataatccttacttttgttcatactagatacatgttgaaactgaaaccgcagaactggcaccgttgcttcaaaggaagcaatttcctccaatttggtctt |
27643258 |
T |
|
| Q |
228 |
atgaagcccatattcctccacaatcaagtcccaaatctcacccttatcacgcattaactccgccaaatcaaactcttccttgtcattcaactccacaaac |
327 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
27643259 |
atgaagcccatattcctccacaatcaggtcccaaatctcacccttatcacgcattaactccaccaaatcaaactcttccttgtcattcaactccacaaac |
27643358 |
T |
|
| Q |
328 |
ttaacatcaaaaacctcactaagcaacatccacatactcttccaagtgaaaacatcaccatttgtgcaattgaacgcttggttcttcacatcttctgtaa |
427 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |
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| T |
27643359 |
ttaacattaaaaacctcactaagcaacatccacatactcttccaagtgaaaacatcaccatttgtgcaattgaaagcttggttcttcgcatcttctgtaa |
27643458 |
T |
|
| Q |
428 |
ctgcagcccacacatgttgttttgcaagcatgcccgcatccgtcatatcacagaaatgctcccaagtgtatttgtttcctggataacgaaaaggtaaccc |
527 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27643459 |
ctgcagcccacacatgttgttttgcaagcacgcccgcatccgtcatatcacagaaatgctcccaagtgtatttgtttcctggataacgaaaaggtaaccc |
27643558 |
T |
|
| Q |
528 |
taaatggtgacatatggcagcatatactgctagcttcattagcacgttgtgtgcactccttggtgacatacctattatgatagaggatcgatgtatcgag |
627 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
27643559 |
taaatggtgacatatggcagcatatactgctagcttcattagcacgttgtgtgcactccttggtgacatacctattatgatagatgatcgatgtatcgag |
27643658 |
T |
|
| Q |
628 |
tatgtaacc |
636 |
Q |
| |
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||||||||| |
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| T |
27643659 |
tatgtaacc |
27643667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 41 - 634
Target Start/End: Complemental strand, 50247819 - 50247226
Alignment:
| Q |
41 |
gttggtagaaggatatgagtttcatctccctcagcttagccacccagaatctgatactcttaaacgtatctgcatactcaaagaacccatagttcttact |
140 |
Q |
| |
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|||||||| ||| ||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||| || |||||||| | ||||| |
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|
| T |
50247819 |
gttggtaggagggtataagtttcatctccctcagcttagccacccagagtttgatactcttaaacgtatcagcatactctaaaaacccataatctttact |
50247720 |
T |
|
| Q |
141 |
cttgttcatactagatacatgttgaaactcaaaccgcagaaatggcagtgttgcttcaaaggaagcaatttcctccaatttggtcttatgaagcccatat |
240 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| | || ||||| | ||||||||| |||||||||||| ||| ||||||||||||||||||||| |
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| T |
50247719 |
cttgttcatactagatacatgttgaaactcaaaccgtacaactggcaccatggcttcaaagcaagcaatttccttcaacttggtcttatgaagcccatat |
50247620 |
T |
|
| Q |
241 |
tcctccacaatcaagtcccaaatctcacccttatcacgcattaactccgccaaatcaaactcttccttgtcattcaactccacaaacttaacatcaaaaa |
340 |
Q |
| |
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| ||| |||||||||||||||| ||||||||| |||||||| ||||| | |||||||||||| || |||| |||||| ||||||| ||||||||||| |
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|
| T |
50247619 |
ttctctacaatcaagtcccaaacctcacccttgtcacgcatcaactcaatgatatcaaactcttctttatcatccaactcaacaaactcaacatcaaaaa |
50247520 |
T |
|
| Q |
341 |
cctcactaagcaacatccacatactcttccaagtgaaaacatcaccatttgtgcaattgaacgcttggttcttcacatcttctgtaactgcagcccacac |
440 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||| || ||||||||||| | | | ||||||| |||||||||| |
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|
| T |
50247519 |
cctcactaagcaacatccacatactcttccaagtgaaaatgtcaccgtttgtacaattaaatgcttggttcttagctttctttgtaactccagcccacac |
50247420 |
T |
|
| Q |
441 |
atgttgttttgcaagcatgcccgcatccgtcatatcacagaaatgctcccaagtgtatttgtttcctggataacgaaaaggtaaccctaaatggtgacat |
540 |
Q |
| |
|
|||||| ||||| |||| || ||||| | ||||||||| |||||||||||||||||| | ||||||||||| ||||| |||||||||| |||| ||||| |
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| T |
50247419 |
atgttgctttgccagcacacctgcatctgacatatcacaaaaatgctcccaagtgtatctatttcctggataccgaaacggtaaccctacatggcgacat |
50247320 |
T |
|
| Q |
541 |
atggcagcatatactgctagcttcattagcacgttgtgtgcactccttggtgacatacctattatgatagaggatcgatgtatcgagtatgtaa |
634 |
Q |
| |
|
|| |||||||| |||||| |||| | | ||||| |||||| |||| || || ||||||| ||||||||||||||| |||||||||| |
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| T |
50247319 |
atcgcagcatacgtcgctagcatcatcatcgcgttgattgcacttcttgaagatgcgccaattatgagagaggatcgatgtattgagtatgtaa |
50247226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 35 - 634
Target Start/End: Complemental strand, 50254962 - 50254363
Alignment:
| Q |
35 |
ttcaacgttggtagaaggatatgagtttcatctccctcagcttagccacccagaatctgatactcttaaacgtatctgcatactcaaagaacccatagtt |
134 |
Q |
| |
|
||||| ||| ||||| || |||||| ||||||||||||||||| |||||||||| | | ||| |||||||| || ||||||||||| ||| |||| || |
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| T |
50254962 |
ttcaatgttcgtagatgggtatgagattcatctccctcagcttcatcacccagaatttcacactattaaacgtctcagcatactcaaaaaactcataatt |
50254863 |
T |
|
| Q |
135 |
cttactcttgttcatactagatacatgttgaaactcaaaccgcagaaatggcagtgttgcttcaaaggaagcaatttcctccaatttggtcttatgaagc |
234 |
Q |
| |
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|||||||| ||||||||||||||| ||||||||||||| || | || ||||| || ||||| ||||||||||||||||||||||||||||||| |
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| T |
50254862 |
tttactcttattcatactagatacaagttgaaactcaaatcgaaaaactggcaccaaggcatcaaaacaagcaatttcctccaatttggtcttatgaagt |
50254763 |
T |
|
| Q |
235 |
ccatattcctccacaatcaagtcccaaatctcacccttatcacgcattaactccgccaaatcaaactcttccttgtcattcaactccacaaacttaacat |
334 |
Q |
| |
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||||| |||||||||||| ||||||| |||||||||||||||||| |||| | ||||||||||||||||||| |||| ||| ||||||||||||||| |
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| T |
50254762 |
ccatactcctccacaatctgatcccaaacctcacccttatcacgcataaactgcaccaaatcaaactcttccttttcatccaaatccacaaacttaacag |
50254663 |
T |
|
| Q |
335 |
caaaaacctcactaagcaacatccacatactcttccaagtgaaaacatcaccatttgtgcaattgaacgcttggttcttcacatcttctgtaactgcagc |
434 |
Q |
| |
|
||||| || || ||||| | |||||||||||||||| | |||||| ||||||||||||||||| |||||||||||||| | | | |||||||||||| |
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|
| T |
50254662 |
caaaagtcttacaaagcaccttccacatactcttccatgcgaaaacgtcaccatttgtgcaattaaacgcttggttcttagccttctttgtaactgcagc |
50254563 |
T |
|
| Q |
435 |
ccacacatgttgttttgcaagcatgcccgcatccgtcatatcacagaaatgctcccaagtgtatttgtttcctggataacgaaaaggtaaccctaaatgg |
534 |
Q |
| |
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||| |||||||| ||||| |||| | ||||||||||||||||||||||||||||||||||| | ||||||||| ||||||| ||||| |||| ||| |
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|
| T |
50254562 |
ccatacatgttgctttgccagcacacgagcatccgtcatatcacagaaatgctcccaagtgtacctatttcctggaaaacgaaacggtaatcctacctgg |
50254463 |
T |
|
| Q |
535 |
tgacatatggcagcatatactgctagcttcattagcacgttgtgtgcactccttggtgacatacctattatgatagaggatcgatgtatcgagtatgtaa |
634 |
Q |
| |
|
||||||||||||| ||| ||||| ||| |||| ||||| |||||| ||||| || |||||||||||||||||| |||||||| |||||||||| |
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|
| T |
50254462 |
cgacatatggcagcgtatgtcgctagtaccatcagcatgttgtatgcacttcttggcgaagcacctattatgatagaggaacgatgtattgagtatgtaa |
50254363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 6 - 91
Target Start/End: Original strand, 27646243 - 27646328
Alignment:
| Q |
6 |
gtcgaagaatattattacagataatgcaattcaacgttggtagaaggatatgagtttcatctccctcagcttagccacccagaatc |
91 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
27646243 |
gtcgaacaatattattacagataatgcaattcaatgttggtagaagggtatgagtttcatctccctcagcttagccacccagaatc |
27646328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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