View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4050_low_5 (Length: 558)
Name: NF4050_low_5
Description: NF4050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4050_low_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 490; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 17 - 548
Target Start/End: Complemental strand, 21287489 - 21286956
Alignment:
| Q |
17 |
attacttaatgtttggagtccaactagatcaagaagacttcccatctttgaggaaatatcttcttttagagatcaattggcatgttaatatttgtattca |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21287489 |
attacttaatgtttggagtccaactagatcaagaagacttcccatctttgaggaaatatcttcttttagagatcaattggcatgttaatatttgtattca |
21287390 |
T |
|
| Q |
117 |
tgttcttatgttgtatatattgtcttaggtctaggtttggacaaatagtccattctcttctccgatttcgtattcttcctttgccctttttctccttaaa |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21287389 |
tgttcttatgttgtatatattgtcttaggtctaggtttggacaaaaagtccattctcttctccgatttcgtattcttcctttgccctttttctccttaaa |
21287290 |
T |
|
| Q |
217 |
atggtgaggagaaatatagaataaggtttgcttgtatttggtaaattaatggtgaataatcacagtcctgtcaacttccaaatgtttcttca-tttccaa |
315 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
21287289 |
atggtgaggaaaaatatagaataaggtttgcttgtatttggtaaattaatgatgaataatcacagtcctgtcaacttccaaatgtttcttcattttccaa |
21287190 |
T |
|
| Q |
316 |
gattcttgagtatagggagactagttttcgtgctctctcttattgtcgttttatctggaaagtgttgaattcccaacaaataaacattgttacaagtttg |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
21287189 |
gattcttgagtatagggagactagttttcgtgctctcccttattgtcgttttatttggaaagtgttgaattcccaacgaataaacattgttacaagtttg |
21287090 |
T |
|
| Q |
416 |
ctcaagggacaatctgataggagtggatttgattagtgtgttgtgcacaaaatgcactattatcaggatgctaataagaattggtactacactgagagcg |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21287089 |
ctcaagggacaatctgataggagtggatttgattagtgtgttgtgcacaaaatgcactattatcaggatgctaataagaattggtactacactgagagcg |
21286990 |
T |
|
| Q |
516 |
agtttggatc-ggggtgctatgattgtgcctatg |
548 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||| |
|
|
| T |
21286989 |
agtttggatcgggggtgctatgattgtgtctatg |
21286956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University