View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4050_low_6 (Length: 516)
Name: NF4050_low_6
Description: NF4050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4050_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 420; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 1 - 499
Target Start/End: Complemental strand, 13879284 - 13878804
Alignment:
| Q |
1 |
ttttagttactattttaaatgatgaattagtttgcatgtatttgagatctaaaaagctatttagttagttaattagtgttctgttctgtttgtaccaatt |
100 |
Q |
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| T |
13879284 |
ttttagttactattttaaatgatgaattagtttgcatgtatttgagatctaaaaagctatttagttagttaattagtgttctgttctgtttgtaccaatt |
13879185 |
T |
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| Q |
101 |
tctggatttgacattaattaccaattgctatcaatcaatattataaatatatgattaacaatttcatttgctattataattatatagctagttgatgcaa |
200 |
Q |
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| T |
13879184 |
tctggatttgacattaattaccaattgctatcaatcaatattataaatatatgattaacaatttcatttgctattataattatatagctagttgatgcaa |
13879085 |
T |
|
| Q |
201 |
cttaatctgccttctattttgttgcgatccacctttcaaattttgttatattgattgaagcgtacacacataactgcttgatgcattaaatttagagctg |
300 |
Q |
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| T |
13879084 |
cttaatctgccttctattttgttgcgatcgacctttcaaattttgttatattgattgaagcgtacacacataactgcttgctgcattaaatttagagctg |
13878985 |
T |
|
| Q |
301 |
ttagaaaagatcattgaaaatcaagtgatattctgctgtggcaattggttttctctccatgtacgttcttttaattttcaggtgcatgctaaacaaatat |
400 |
Q |
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| T |
13878984 |
ttagaaaagatcattgaaaatcaagtgatattctgctgtggcaattggttttctctccatgtacgttcttt------------------taaaccaatat |
13878903 |
T |
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| Q |
401 |
atggtggcgacaggacatacaaagttttaattagcaccaaaggtaatagatagataacttttctttttattcatgagctgagggctgaggcttttaatg |
499 |
Q |
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| T |
13878902 |
atggtggcgacaggacatacaaagttttaattagcaccaaaggtaatagatagataacttttcactttattcatgagctgagggctgaggcttttaatg |
13878804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 249 - 311
Target Start/End: Complemental strand, 13874799 - 13874737
Alignment:
| Q |
249 |
tattgattgaagcgtacacacataactgcttgatgcattaaatttagagctgttagaaaagat |
311 |
Q |
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| T |
13874799 |
tattgattgaagcgtacacacataattgcttgctgcattatacttagagctgttagaaaagat |
13874737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 119 - 157
Target Start/End: Complemental strand, 13885034 - 13884996
Alignment:
| Q |
119 |
taccaattgctatcaatcaatattataaatatatgatta |
157 |
Q |
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| T |
13885034 |
taccaattggtatcaatcaatattataaatatatgatta |
13884996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 13885154 - 13885075
Alignment:
| Q |
1 |
ttttagttactattttaaatgatgaattagtttgc---atgtatttgagatctaaaaagctatttagttagttaattagt |
77 |
Q |
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| T |
13885154 |
ttttagttgctattttaaatgcttaattagtatgatgaatgtattagagatctaaaaagggatttagttggttaattagt |
13885075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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