View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4050_low_7 (Length: 454)
Name: NF4050_low_7
Description: NF4050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4050_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 409; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 18 - 446
Target Start/End: Complemental strand, 1855840 - 1855412
Alignment:
| Q |
18 |
atcaacacattcgctattttccttgcaggcatagctatttgtagtttgggctatttgacatgattcatttgtaacaacccaattaacaaccatagggaaa |
117 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1855840 |
atcaacacattcactattttccttgcaggcatagctatttgtagtttgggctattcgacatgattcatttgtaacaacccaattaacaaccatagggaaa |
1855741 |
T |
|
| Q |
118 |
gtgttataaggcagtttcttgatatgttctacagaaaaattataggatccttgttttgcaataaaggaatagctacaagaattttccatagatagtgtag |
217 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1855740 |
gtgttataaggcagtttcttaatatgttctacagaaaaattataggatccttgttttgcaataaaggaatagctacaagaattttccatagatagtgtag |
1855641 |
T |
|
| Q |
218 |
aaggtgagaatttaaatgcttctatggtgatatttttcataagtggaggaatatcaacttcacaacaacctaaacctgtgcactttccagtgttatttcc |
317 |
Q |
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| T |
1855640 |
aaggtgagaatttaaatgcttgtatggtgatatttttcataagtggaggaatatcaacttcacaacaacctaaacctgtgcactttccagtgttatttcc |
1855541 |
T |
|
| Q |
318 |
aattaccattttagtatcaaaatcataacatcttgttaagcatcctgtagaataagtggcacccttgaaattactgttgagatatccgtaactgtcacaa |
417 |
Q |
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| T |
1855540 |
aattaccattttagtatcaaaatcataacatcttgttaagcatcctgtagaataagtggcacccttgaaattactgttgagatatccgaaactgtcacaa |
1855441 |
T |
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| Q |
418 |
ccaactgttatgaatttgttgtctgtgct |
446 |
Q |
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| T |
1855440 |
ccaactgttatgaatttgttgtctgtgct |
1855412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 22 - 437
Target Start/End: Original strand, 1817355 - 1817770
Alignment:
| Q |
22 |
acacattcgctattttccttgcaggcatagctatttgtagtttgggctatttgacatgattcatttgtaacaacccaattaacaaccatagggaaagtgt |
121 |
Q |
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|||||||| ||||||| ||||||||| |||||||||||||| || ||||||||||||||||||||||||| | ||||||||| ||||| |||||||| | |
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| T |
1817355 |
acacattcactatttttcttgcaggcgtagctatttgtagtgtgagctatttgacatgattcatttgtaatagcccaattaataaccaaggggaaagttt |
1817454 |
T |
|
| Q |
122 |
tataaggcagtttcttgatatgttctacagaaaaattataggatccttgttttgcaataaaggaatagctacaagaattttccatagatagtgtagaagg |
221 |
Q |
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|| ||| || || || ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
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| T |
1817455 |
cattaggtagattatttatatggtctacagaaaatttataggatccttgttttgcaataaaggaatagctacaagaattttccttagatagggtagaagt |
1817554 |
T |
|
| Q |
222 |
tgagaatttaaatgcttctatggtgatatttttcataagtggaggaatatcaacttcacaacaacctaaacctgtgcactttccagtgttatttccaatt |
321 |
Q |
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|| ||||||||||||||| || ||||||||||||||| | ||||||||| |||| ||||| |||||||||||||| |||||||||||||| |||||| |
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| T |
1817555 |
tgggaatttaaatgcttcaattgtgatatttttcatactagaaggaatatccacttggcaacaccctaaacctgtgcattttccagtgttattcccaatt |
1817654 |
T |
|
| Q |
322 |
accattttagtatcaaaatcataacatcttgttaagcatcctgtagaataagtggcacccttgaaattactgttgagatatccgtaactgtcacaaccaa |
421 |
Q |
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|| ||||||| | |||||||||||||||||||||||| ||||| ||||||||| |||| ||||||||||||||||||||||||||||||| ||||||| |
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| T |
1817655 |
actattttaggtttaaaatcataacatcttgttaagcaccctgttgaataagtgccacctgtgaaattactgttgagatatccgtaactgtcgcaaccaa |
1817754 |
T |
|
| Q |
422 |
ctgttatgaatttgtt |
437 |
Q |
| |
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| |||||||||||||| |
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| T |
1817755 |
cggttatgaatttgtt |
1817770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 341 - 446
Target Start/End: Original strand, 9220511 - 9220616
Alignment:
| Q |
341 |
cataacatcttgttaagcatcctgtagaataagtggcacccttgaaattactgttgagatatccgtaactgtcacaaccaactgttatgaatttgttgtc |
440 |
Q |
| |
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||||||||||||||||||| || || ||||| || | | ||| || ||||||||||||| |||||||||||||||||||| |||||||| ||||| || |
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| T |
9220511 |
cataacatcttgttaagcaaccggttgaatatgtttcttcgttgtaaatactgttgagataaccgtaactgtcacaaccaaccgttatgaacttgttttc |
9220610 |
T |
|
| Q |
441 |
tgtgct |
446 |
Q |
| |
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||||| |
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| T |
9220611 |
agtgct |
9220616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 390 - 437
Target Start/End: Original strand, 9158110 - 9158157
Alignment:
| Q |
390 |
actgttgagatatccgtaactgtcacaaccaactgttatgaatttgtt |
437 |
Q |
| |
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|||||||||||| |||||||||||||||||||| |||| ||| ||||| |
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| T |
9158110 |
actgttgagataaccgtaactgtcacaaccaaccgttacgaacttgtt |
9158157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 155; Significance: 4e-82; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 168 - 446
Target Start/End: Complemental strand, 37567171 - 37566880
Alignment:
| Q |
168 |
ttgttttgcaataaaggaatagctacaagaattttccatagatagtgtagaaggtgagaatttaaatgcttctatggtgatatttttcataagtggagga |
267 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||| ||| || ||||||||||||||| | |||| |
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| T |
37567171 |
ttgttttgcaataaaggaatagctacaagaattttccatagacagtgtagaagttgggaatttaaatgtttcaattgtgatatttttcatactagaagga |
37567072 |
T |
|
| Q |
268 |
atatcaacttcacaacaacctaaacct------gtgcactttccagtgttatttccaattaccattttagtatcaaaatcataacatcttgttaa----- |
356 |
Q |
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| T |
37567071 |
atatccacttggcaacaccctaaacctaggcctgtgcattttccagtgttattcccagttaccattttaggatcaaaatcataacatcttgttaactgtt |
37566972 |
T |
|
| Q |
357 |
--gcatcctgtagaataagtggcacccttgaaattactgttgagatatccgtaactgtcacaaccaactgttatgaatttgttgtctgtgct |
446 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| || ||||| |
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| T |
37566971 |
aagcatcctgtagaataagtggcacccttgaaattactgttgagatatccgtaactgtcgcaaccaacggttatgaatttgttttccgtgct |
37566880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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