View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4050_low_8 (Length: 430)
Name: NF4050_low_8
Description: NF4050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4050_low_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 180; Significance: 5e-97; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 6 - 185
Target Start/End: Original strand, 2499814 - 2499993
Alignment:
| Q |
6 |
acatgagtcatgacctccaactttcaaaagagcatcttcccattataccttgaaaagctaattcatatggaaaatttgggacaaatgagaaaatttcttt |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2499814 |
acatgagtcatgacctccaactttcaaaagagcatcttcccattataccttgaaaagctaattcatatggaaaatttgggacaaatgagaaaatttcttt |
2499913 |
T |
|
| Q |
106 |
ctcacaaaaatgattcaataactcgtgtcttcatattaattttgccaaggaagcatatactcttaattttagaccggtaa |
185 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2499914 |
ctcacaaaaatgattcaataactcgtgtcttcatattaattttgccaaggaagcatatactcttaattttagaccggtaa |
2499993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 184 - 350
Target Start/End: Original strand, 2500105 - 2500275
Alignment:
| Q |
184 |
aattattatagaatgccaattattgccaatttttcatgagtttatcgtagttggtatagacattgtataatatatgcagaagtttgaattcgagtcttac |
283 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
2500105 |
aattattatagaatgccaattattgccaatttttcatgagtttaccgtagttggtataaacattgtataatatatgtagaagtttgaattcgagtcttac |
2500204 |
T |
|
| Q |
284 |
acacctcatttactcatc----gaggtaattttttaacataatgattacgtaatttatgttaccacctgag |
350 |
Q |
| |
|
||| |||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2500205 |
acatctcatttattcatcttaagaggtaatattttaacataatgattacgtaatttatgttaccacctgag |
2500275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University