View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4050_low_9 (Length: 428)
Name: NF4050_low_9
Description: NF4050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4050_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 412
Target Start/End: Original strand, 32215071 - 32215482
Alignment:
| Q |
1 |
agaagaggagtatgcatagcagcacttctagatagatgtttagatgggccaattatttgggttttgtctcatttggtctatgatggatctatattagaaa |
100 |
Q |
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| T |
32215071 |
agaagaggagtatgcatagcagcacttctagatagatgtttagatgggccaattatttgggttttgtctcatttggtctatgatggatctatattagaaa |
32215170 |
T |
|
| Q |
101 |
atcatctaaaactttgagaaatttgttcaacagatatctcaattttactttcaatcgagtcctaggtccagattga-tttttaagtcaattgagtaatct |
199 |
Q |
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||||||||||||||||||||||||||||| || |||||||||||| |||||||||||||| |||||||| ||||| ||||| |||||||||||| |||| |
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| T |
32215171 |
atcatctaaaactttgagaaatttgttcagcaaatatctcaatttcgctttcaatcgagtcgtaggtccaaattgatttttttagtcaattgagtgatct |
32215270 |
T |
|
| Q |
200 |
tgaagtccatggagcaaccatcatactttgatattaatcgagtcaaaatctttttagcaaaagttcatggtcctctacattcttataattgatatagtga |
299 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
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| T |
32215271 |
tgaagtccatggagcaaccatcatattttgatattaatcgagtcaaaatctttttagcaaaagttcatggtcctccacattcttataattgacatagtga |
32215370 |
T |
|
| Q |
300 |
catgattgatatcaattcgatnnnnnnnnnntacctaacctaaattgaggattgagaaaaattaatatgataaattcctagtttcctacccatgaggact |
399 |
Q |
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||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32215371 |
catgattgatatcgattcgataaaaaaaaaa-acctaacctaaattgaggattgaggaaaattaatatgataaattcctagtttcctacccatgaggact |
32215469 |
T |
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| Q |
400 |
tgaatcaattgtt |
412 |
Q |
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||||||||||||| |
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| T |
32215470 |
tgaatcaattgtt |
32215482 |
T |
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