View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4051_high_10 (Length: 433)
Name: NF4051_high_10
Description: NF4051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4051_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 309; Significance: 1e-174; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 56 - 418
Target Start/End: Complemental strand, 41657680 - 41657313
Alignment:
| Q |
56 |
ttctgctcgttgaaaaacaagaacaactgttccctataccaaaaagtaaggaatgatataacagatccataaaaggatggaaagaaaaatataatatgca |
155 |
Q |
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| T |
41657680 |
ttctgctggttgaaaaacaagaacaactgttccctataccaaaaa-taaggaatgatatcacagatccataaaaggatggaaagaaaaatataatatgca |
41657582 |
T |
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| Q |
156 |
ggagtcatcttgattatttgtttgttacaattaaaacaataatagaatgacgataacatacaaa---gttggcgtaatgagaacccaaaatttggcatca |
252 |
Q |
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| T |
41657581 |
ggagtcatcttgattatgtgtttgttacaattaaaacaataatagaatgacggtaacatacaaattagttggcgtaatgagaacccaaaatttggcatca |
41657482 |
T |
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| Q |
253 |
gtttgccaatatgaaaatgtaagaaatataagtcatgtttcactttggcatgattgacagtttggaacaaaaaacatct---taaacaacaaaagtgcac |
349 |
Q |
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| T |
41657481 |
gtttgccaatatgaaaatgtaagaaatataagtcatgtttcactttggcatgattgacagattggaacaaaaaacatcttaataaacaacaaaagtgcac |
41657382 |
T |
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| Q |
350 |
accctaaatttaagtagttaaaacatgggtgacaatttagatttaatctatgtaatttggattaaaaaa |
418 |
Q |
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| T |
41657381 |
accctaaatttaagtagttaaaacatgggtgacaatttagatttgatctatgtaatttggattaaaaaa |
41657313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 211 - 309
Target Start/End: Complemental strand, 41651439 - 41651341
Alignment:
| Q |
211 |
acatacaaagttggcgtaatgagaacccaaaatttggcatcagtttgccaatatgaaaatgtaagaaatataagtcatgtttcactttggcatgattga |
309 |
Q |
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| T |
41651439 |
acatacaaaattggcataatgagcactcaaaatttggcattagtttgccaatatgcaaatgtaaaaaacagaattcatgtttgattttggcatgattga |
41651341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 56 - 134
Target Start/End: Original strand, 43226433 - 43226508
Alignment:
| Q |
56 |
ttctgctcgttgaaaaacaagaacaactgttccctataccaaaaagtaaggaatgatataacagatccataaaaggatg |
134 |
Q |
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| T |
43226433 |
ttctgctggttgaaaaacaagaacaacagttccctatac---aaaataaggaatgatatcatggatccataaaaggatg |
43226508 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 56 - 132
Target Start/End: Original strand, 43204725 - 43204800
Alignment:
| Q |
56 |
ttctgctcgttgaaaaacaagaacaactgttccctataccaaaaagtaaggaatgatataacagatccataaaagga |
132 |
Q |
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| T |
43204725 |
ttctgctggttgaaaaacaagaactattgttccctataataaaaa-taaggaatgatatcacagatacatagaagga |
43204800 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 211 - 309
Target Start/End: Original strand, 43226691 - 43226790
Alignment:
| Q |
211 |
acatacaaagttggcgtaatgagaacccaaaatttggcatcagtttgccaatatgaaaatgt-aagaaatataagtcatgtttcactttggcatgattga |
309 |
Q |
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| T |
43226691 |
acataaaaaattggcataatgagcacttaaaatttggcattagtgtgccaatatgcaaatgtaaaaaaatagaattcatgtttgattttggcatgattga |
43226790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 264
Target Start/End: Original strand, 43205461 - 43205509
Alignment:
| Q |
216 |
caaagttggcgtaatgagaacccaaaatttggcatcagtttgccaatat |
264 |
Q |
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| T |
43205461 |
caaagttggcataatgaatactcaaaatttggcatcagtttgccaatat |
43205509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 56 - 94
Target Start/End: Complemental strand, 41651668 - 41651630
Alignment:
| Q |
56 |
ttctgctcgttgaaaaacaagaacaactgttccctatac |
94 |
Q |
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| T |
41651668 |
ttctgctggttgaaaaacaagaacaacagttccctatac |
41651630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 47280791 - 47280847
Alignment:
| Q |
1 |
ccttattccgaattacatgctgccaaatgttccttagctcctccaatctcacaggtt |
57 |
Q |
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| T |
47280791 |
ccttattccgaattacatgctgccaaatgttccttagctcctccaatctcacaggtt |
47280847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 6 - 57
Target Start/End: Original strand, 49060912 - 49060963
Alignment:
| Q |
6 |
ttccgaattacatgctgccaaatgttccttagctcctccaatctcacaggtt |
57 |
Q |
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|||| |||||||||||||||||||||| |||||||||| ||||||||||||| |
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| T |
49060912 |
ttcctaattacatgctgccaaatgttctttagctcctctaatctcacaggtt |
49060963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 6 - 57
Target Start/End: Original strand, 47275111 - 47275162
Alignment:
| Q |
6 |
ttccgaattacatgctgccaaatgttccttagctcctccaatctcacaggtt |
57 |
Q |
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| T |
47275111 |
ttccgaattacatgctgccaaatggtctttagctcctgtaatctcacaggtt |
47275162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 209 - 270
Target Start/End: Original strand, 25928955 - 25929016
Alignment:
| Q |
209 |
taacatacaaagttggcgtaatgagaacccaaaatttggcatcagtttgccaatatgaaaat |
270 |
Q |
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| T |
25928955 |
taacatacaaaattggcacaaagagcactcaaaatttggcatcagtttgccaatatgcaaat |
25929016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 134
Target Start/End: Original strand, 25928720 - 25928787
Alignment:
| Q |
64 |
gttgaaaaacaagaacaactgttccctataccaaaaagtaaggaatgatataacagatccataaaaggatg |
134 |
Q |
| |
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||||||||||||||||||| |||||| ||| ||| ||||||||||||| | |||||||||||||||| |
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| T |
25928720 |
gttgaaaaacaagaacaacatttccctgtacaaaa---taaggaatgatatcatggatccataaaaggatg |
25928787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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