View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4051_high_11 (Length: 395)
Name: NF4051_high_11
Description: NF4051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4051_high_11 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 320; Significance: 1e-180; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 16 - 381
Target Start/End: Original strand, 33337082 - 33337444
Alignment:
| Q |
16 |
caattttgggagtatgatccgaatcttggaactgaacaagaacgagctcaagtggaacaagctcgcaaacaatttcatgaaaatcgcttcaaaactaaga |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33337082 |
caattttgggagtatgatccgaatcttggaactgaacaaaaacgagctcaagtggaacaagctcgcaaacaatttcatgaaaatcgcttcaaaactaaga |
33337181 |
T |
|
| Q |
116 |
acagttctgatctcttaatgagactccaggtaaatacatgcataaatattataatttacatatagtgctgaagggtaaataaataattaattttggtttt |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
33337182 |
acagttctgatctcttaatgagactccaggtaaatacatgcataaatattata----acatataatgctgaagggtaaat-aataattaattttggtttt |
33337276 |
T |
|
| Q |
216 |
gtagtttgagagggaaaaaggttttttaaatatgaaatcagagaataata--ataaggtgaaaatggagaaggaagaagtgggaaagacactaaaaagag |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33337277 |
gtagtttgagagggaaaaaggttttttaaatatgaaatcagagaataataatataaggtgaaaatggagaaggaagaagtgggaaagacactaaaaagag |
33337376 |
T |
|
| Q |
314 |
cattgagattttactcaacactgcaaactgaagatggtttctggcctggtgactatggtggtcctttg |
381 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
33337377 |
cattgagattttactcaacactgcaaactgaagatggtttctggcctggtgattatggtggtcctttg |
33337444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 16 - 169
Target Start/End: Complemental strand, 35131049 - 35130896
Alignment:
| Q |
16 |
caattttgggagtatgatccgaatcttggaactgaacaagaacgagctcaagtggaacaagctcgcaaacaatttcatgaaaatcgcttcaaaactaaga |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
35131049 |
caattttgggagtatgatccgaatcttggaaatgaacaagaacgagctcaagtggaacatgctcgcaaacaatttcatgtcaatcgcttcaaaactaaga |
35130950 |
T |
|
| Q |
116 |
acagttctgatctcttaatgagactccaggtaaatacatgcataaatattataa |
169 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35130949 |
acagttctgatctcttaatgagactccaggtaaatacatgcataaatattataa |
35130896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 284 - 381
Target Start/End: Complemental strand, 35130702 - 35130605
Alignment:
| Q |
284 |
aggaagaagtgggaaagacactaaaaagagcattgagattttactcaacactgcaaactgaagatggtttctggcctggtgactatggtggtcctttg |
381 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
35130702 |
aggaaaaagtgggaaagacactaaaaagagcattgagatgttactcaacattgcaaactgaggatggtttctggcctggtgactatggtggtcctttg |
35130605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 194 - 292
Target Start/End: Complemental strand, 35130819 - 35130718
Alignment:
| Q |
194 |
ataaataattaattttggttttgtagtttgagagggaaaaaggttttttaaatatgaaatcag---agaataataataaggtgaaaatggagaaggaaga |
290 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
35130819 |
ataaatacttaattttggttttgtagtttgaaagggaaaaaggtgttttaaatatgaaatcagagaagaataataataaggtgaaaatggagaaggaaga |
35130720 |
T |
|
| Q |
291 |
ag |
292 |
Q |
| |
|
|| |
|
|
| T |
35130719 |
ag |
35130718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 81; Significance: 5e-38; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 19 - 147
Target Start/End: Original strand, 22501928 - 22502056
Alignment:
| Q |
19 |
ttttgggagtatgatccgaatcttggaactgaacaagaacgagctcaagtggaacaagctcgcaaacaatttcatgaaaatcgcttcaaaactaagaaca |
118 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||| | ||| |||| |
|
|
| T |
22501928 |
ttttgggagttcgatccacatcttggaactgaacaagaacgagctcaagtagaacaagctcgcaaacaatttaatcaaaatcgcttcaacaataaaaaca |
22502027 |
T |
|
| Q |
119 |
gttctgatctcttaatgagactccaggta |
147 |
Q |
| |
|
|||||||||||||||||||| | |||||| |
|
|
| T |
22502028 |
gttctgatctcttaatgagattacaggta |
22502056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 291 - 374
Target Start/End: Original strand, 22502355 - 22502438
Alignment:
| Q |
291 |
agtgggaaagacactaaaaagagcattgagattttactcaacactgcaaactgaagatggtttctggcctggtgactatggtgg |
374 |
Q |
| |
|
|||| ||| |||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
22502355 |
agtgagaaggacactaaaaagagcactgagaaattactcaacactgcaggttgaagatggtttctggccgggtgactatggtgg |
22502438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 238
Target Start/End: Original strand, 22502226 - 22502266
Alignment:
| Q |
198 |
ataattaattttggttttgtagtttgagagggaaaaaggtt |
238 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
22502226 |
ataaataattttggttttgcagtttgagagggaaaaaggtt |
22502266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University