View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4051_high_13 (Length: 346)
Name: NF4051_high_13
Description: NF4051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4051_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 327
Target Start/End: Original strand, 41144883 - 41145209
Alignment:
| Q |
1 |
agtatgtgacaatgcatgtcaacaaaaagagcatagcaccactaccataatccatatctgaaagnnnnnnnntcaggacaagtaaaatatgtgttagcac |
100 |
Q |
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| T |
41144883 |
agtatgtgacaatgcatgtcaacaaaaagagcatagcaccactaccataatccatatctgaaagaaaaaaaatcaggacaagtaaagtatgtgttagcac |
41144982 |
T |
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| Q |
101 |
caaggagacaggaaattttaatttgttgtattacttataagtaattcatcatattgaatataataataatgtgagcagaaattttcacaaaaatttaagc |
200 |
Q |
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| T |
41144983 |
caaggagacaggaaattttaatttgttgtattacttataagtaattcatgatattgaatattataataatgtgagcagaaattttcacaaaaatttaagc |
41145082 |
T |
|
| Q |
201 |
atagtacattatacatcacatatggtcaggtttagttaattcatatactatattgacattataaattaatggcattggaaacactatcatcaaaatctga |
300 |
Q |
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| T |
41145083 |
atagtacattatacatcacatatggtcaggtttagttaattcatatactatattgacattataaattaatggcattggaaacactatcatcaaaatctga |
41145182 |
T |
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| Q |
301 |
atatgggaaagagagatgagaggtaag |
327 |
Q |
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| T |
41145183 |
atatgggaaagagagatgagaggtaag |
41145209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 41120919 - 41120955
Alignment:
| Q |
256 |
acattataaattaatggcattggaaacactatcatca |
292 |
Q |
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| T |
41120919 |
acattataaattaatggcattggaaacactatcatca |
41120955 |
T |
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