View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4051_high_14 (Length: 345)

Name: NF4051_high_14
Description: NF4051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4051_high_14
NF4051_high_14
[»] chr1 (3 HSPs)
chr1 (10-157)||(49584596-49584744)
chr1 (266-329)||(49584892-49584955)
chr1 (165-204)||(49584791-49584830)


Alignment Details
Target: chr1 (Bit Score: 68; Significance: 3e-30; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 10 - 157
Target Start/End: Original strand, 49584596 - 49584744
Alignment:
Q  10 acatcatcatcactcatgcacccaaaaactagacatgttacattacaagaaaga--nnnnnnnnnnnnngttataaacattacaaaaaatatccatnnnn 107  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||               |||||||||||||||||||||||||||        
T  49584596 acatcatcatcactcatgcacccaaaa-ctagacatgttacattacaagaaagattttttattttttttgttataaacattacaaaaaatatccataaaa 49584694  T
Q  108 nnnngttgcatggaaaatcaaattagacccatatgagaaattttacttag 157  Q
        ||||||||||||||||||||||||||||||||||||||||||||||    
T  49584695 aaaagttgcatggaaaatcaaattagacccatatgagaaattttacttag 49584744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 266 - 329
Target Start/End: Original strand, 49584892 - 49584955
Alignment:
Q  266 caccaagtaattaacactgaattggggcaatgtttaagggagagttgaaaatgaatgaataata 329  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  49584892 caccaagtaattaacactgaattggggcaacgtttaagggagagttgaaaatgaatgaataata 49584955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 165 - 204
Target Start/End: Original strand, 49584791 - 49584830
Alignment:
Q  165 cagatttaacaatttgacagaatctaagatagatcatttg 204  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  49584791 cagatttaacaatttgacagaatctaacatagatcatttg 49584830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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