View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4051_high_16 (Length: 326)
Name: NF4051_high_16
Description: NF4051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4051_high_16 |
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Alignment Details
Target: chr8 (Bit Score: 166; Significance: 8e-89; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 81 - 283
Target Start/End: Original strand, 35406960 - 35407162
Alignment:
| Q |
81 |
aaggagtgagtcttgatagtgaaactcttttaaatacatgcaagttttagatttaagaaattctctgtttgagactctacttaattgatcaattgctaaa |
180 |
Q |
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| T |
35406960 |
aaggagtgagtcttgatagtgaaacttttttaaatacatgcaagttttagatttaagaaattctatgtttgagactctacttaattgatcaattgctaaa |
35407059 |
T |
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| Q |
181 |
ttagaatacttatgtgcaagnnnnnnnactcaatggatgcatggattggatattgaaacactgcctaaatggttaggcaagctgatcagccttcgagaat |
280 |
Q |
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| T |
35407060 |
ttagaatacttatgtggaagtttgtttactcaatggatgcatggattggatattgaaacactgcctaaatggttaggcaagctgatcagcctttgagaat |
35407159 |
T |
|
| Q |
281 |
tat |
283 |
Q |
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| T |
35407160 |
tat |
35407162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 35406866 - 35406935
Alignment:
| Q |
19 |
caagtaaagcatttatcaattgttgaaaatgtttcaatttgccattctttgttccccaagtcaaggagtg |
88 |
Q |
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| T |
35406866 |
caagtaaagcatttatcaattgttgaaaatgtttcaatttcccattctttgttccccaagtcaaggagtg |
35406935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 6e-28; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 21 - 88
Target Start/End: Complemental strand, 18117269 - 18117202
Alignment:
| Q |
21 |
agtaaagcatttatcaattgttgaaaatgtttcaatttgccattctttgttccccaagtcaaggagtg |
88 |
Q |
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| T |
18117269 |
agtaaagcatttatcaattgttgaaaatgtttcaatttgcgattctttgttccccaagtcaaggagtg |
18117202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 233 - 278
Target Start/End: Complemental strand, 18132985 - 18132940
Alignment:
| Q |
233 |
ttgaaacactgcctaaatggttaggcaagctgatcagccttcgaga |
278 |
Q |
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| T |
18132985 |
ttgaaacactgcctaaagggttaggcaagctgatcagccttcgaga |
18132940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 83
Target Start/End: Complemental strand, 18124915 - 18124860
Alignment:
| Q |
28 |
catttatcaattgttgaaaatgtttcaatttgccattctttgttccccaagtcaag |
83 |
Q |
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| T |
18124915 |
catttatcaattgttgaaaatgattcacttggccatactttattccccaagtcaag |
18124860 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 233 - 274
Target Start/End: Complemental strand, 18116943 - 18116902
Alignment:
| Q |
233 |
ttgaaacactgcctaaatggttaggcaagctgatcagccttc |
274 |
Q |
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| T |
18116943 |
ttgaaacattgcctaaagggttaggcaagctgatcagccttc |
18116902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 186
Target Start/End: Complemental strand, 18117124 - 18117053
Alignment:
| Q |
112 |
aaatacatgcaagttttagatttaagaaattctctgtttgagactctacttaattgatcaattgctaaattagaa |
186 |
Q |
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| T |
18117124 |
aaatacttgcgagttttagatttaagaaattcttcgatcgagactctacctaat---tcaattgctacattagaa |
18117053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 80
Target Start/End: Original strand, 36223683 - 36223736
Alignment:
| Q |
27 |
gcatttatcaattgttgaaaatgtttcaatttgccattctttgttccccaagtc |
80 |
Q |
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|||| |||||||||||||||||| |||| || ||||| ||||||||||||||| |
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| T |
36223683 |
gcatatatcaattgttgaaaatggttcacttggccatgatttgttccccaagtc |
36223736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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