View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4051_high_17 (Length: 324)
Name: NF4051_high_17
Description: NF4051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4051_high_17 |
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Alignment Details
Target: chr7 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 17 - 178
Target Start/End: Complemental strand, 44729510 - 44729349
Alignment:
| Q |
17 |
agaaaggtaaaaggaacacaagaatgttctaatcctccttagccttattaatcgccaagttcattgacatcaagcaaagggaacaggcttcattgcataa |
116 |
Q |
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| T |
44729510 |
agaaaggtaaaaggaacacaagaatgttctaatcctccttagccttattaattgccaagttcattgacatcaagcaaagggaacaggcttcattgcataa |
44729411 |
T |
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| Q |
117 |
cttcgctttgcaagctttacttctgagttcaaactcaagatcctcaggacgcactcatattc |
178 |
Q |
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| T |
44729410 |
cttcgctttgcaagctttacttctgagttcaaactcaagatcctccggacgcactcatattc |
44729349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 242 - 307
Target Start/End: Complemental strand, 44729284 - 44729219
Alignment:
| Q |
242 |
gtctttatttctccacaaatatttctaataagattctcgggatgtactcatattcctttaagaaag |
307 |
Q |
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| T |
44729284 |
gtctttatttctccacaaatatttctaataagattctcgggatgtactcatattcctttaagaaag |
44729219 |
T |
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