View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4051_high_20 (Length: 308)
Name: NF4051_high_20
Description: NF4051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4051_high_20 |
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Alignment Details
Target: chr8 (Bit Score: 138; Significance: 4e-72; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 38 - 183
Target Start/End: Original strand, 8750021 - 8750166
Alignment:
| Q |
38 |
tgaagaaagtcgcgtgaggttaaagataggtgaaggaagagagattgaatggacaaaattacccttaatgtaattaattaaaaatgccacatggaagtgt |
137 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
8750021 |
tgaagaaagtcgcgtgaggttaaagataggtgaaggaagagagattgaatagacaaaattacccttaatgtaattaattaaaaatgccacatgggagtgt |
8750120 |
T |
|
| Q |
138 |
gtagaatggtgtgtgccaactatggaggtttgtgtatcatcactca |
183 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8750121 |
gtagaatggtgtgtgccaactatggaggtttgtgtatcatcactca |
8750166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 38 - 182
Target Start/End: Complemental strand, 24963198 - 24963054
Alignment:
| Q |
38 |
tgaagaaagtcgcgtgaggttaaagataggtgaaggaagagagattgaatggacaaaattacccttaatgtaattaattaaaaatgccacatggaagtgt |
137 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
24963198 |
tgaagaaagtcgcgtgaggttaaagataggtgaaggaagagagattgaatggacaaaattacccttaatgtaattaattaaaaatgccacatgggagtgt |
24963099 |
T |
|
| Q |
138 |
gtagaatggtgtgtgccaactatggaggtttgtgtatcatcactc |
182 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24963098 |
ttagaatggtgtgtgccaactatggaggtttgtgtatcatcactc |
24963054 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 38 - 182
Target Start/End: Complemental strand, 38112629 - 38112485
Alignment:
| Q |
38 |
tgaagaaagtcgcgtgaggttaaagataggtgaaggaagagagattgaatggacaaaattacccttaatgtaattaattaaaaatgccacatggaagtgt |
137 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
38112629 |
tgaagaaagtcgcgtgaggttaaagataggtgaaggaagagagattgaatggacaaaattacccttaatgtaattaattaaaaatgccacatgagagtgt |
38112530 |
T |
|
| Q |
138 |
gtagaatggtgtgtgccaactatggaggtttgtgtatcatcactc |
182 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38112529 |
gtagaatggtgtgtgccaactatggaggtttgtgtatcatcactc |
38112485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 61 - 182
Target Start/End: Original strand, 41648542 - 41648661
Alignment:
| Q |
61 |
agataggtgaaggaagagagattgaatggacaaaattacccttaatgtaattaattaaaaatgccacatggaagtgtgtagaatggtgtgtgccaactat |
160 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||| | ||| ||||| ||| |
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|
| T |
41648542 |
agatgggtgaaggaagagag--tgaatggacaaaattacccttaataaaattatttaaaaatgccacatgggagtgtgtagaaggatgtatgccatgtat |
41648639 |
T |
|
| Q |
161 |
ggaggtttgtgtatcatcactc |
182 |
Q |
| |
|
||| |||||| ||||||||||| |
|
|
| T |
41648640 |
ggatgtttgtatatcatcactc |
41648661 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 69 - 163
Target Start/End: Original strand, 42787411 - 42787506
Alignment:
| Q |
69 |
gaaggaagagagattgaatggacaaaattacccttaatgtaattaattaaaaatgccacatggaa-gtgtgtagaatggtgtgtgccaactatgga |
163 |
Q |
| |
|
||||||||||| | |||||||||||||||||| | ||| ||||||||||||||||||||||| || |||||||||| ||| | ||||| ||||||| |
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|
| T |
42787411 |
gaaggaagagaaagtgaatggacaaaattaccttcaatataattaattaaaaatgccacatgaaaggtgtgtagaagggtctatgccacctatgga |
42787506 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 129
Target Start/End: Complemental strand, 3776389 - 3776344
Alignment:
| Q |
84 |
gaatggacaaaattacccttaatgtaattaattaaaaatgccacat |
129 |
Q |
| |
|
|||| |||||||||||||||| || ||||||| ||||||||||||| |
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|
| T |
3776389 |
gaattgacaaaattacccttactgaaattaataaaaaatgccacat |
3776344 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 38 - 182
Target Start/End: Original strand, 40404099 - 40404243
Alignment:
| Q |
38 |
tgaagaaagtcgcgtgaggttaaagataggtgaaggaagagagattgaatggacaaaattacccttaatgtaattaattaaaaatgccacatggaagtgt |
137 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
40404099 |
tgaagaaagtcgcgtgaggttaaagataggtgaaggaagagagattgaattgacaaaattacccttaatgtaattaattaaaaatgccacatgggagtgt |
40404198 |
T |
|
| Q |
138 |
gtagaatggtgtgtgccaactatggaggtttgtgtatcatcactc |
182 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40404199 |
gtagaatggtgtgtgccaactatggaggtttgtgtatcatcactc |
40404243 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 82 - 129
Target Start/End: Complemental strand, 43353838 - 43353791
Alignment:
| Q |
82 |
ttgaatggacaaaattacccttaatgtaattaattaaaaatgccacat |
129 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
43353838 |
ttgaatggacaaaattacccttaaaaaaattaattaaaaatgccacat |
43353791 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 183 - 290
Target Start/End: Complemental strand, 31961457 - 31961350
Alignment:
| Q |
183 |
aagaaaaaggattagctcaagtagacatgatcatcttaagttttcatattccannnnnnngttcaaattgagagtaatgacacttcgatttcaccatgat |
282 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
31961457 |
aagaaaaaggattagctcaagtagacatgatcatcttaagttttcatattccatttttttgttcaaattgtgagtaatgacacttcgatttcaccatgat |
31961358 |
T |
|
| Q |
283 |
tttttcat |
290 |
Q |
| |
|
|||||||| |
|
|
| T |
31961357 |
tttttcat |
31961350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 52 - 123
Target Start/End: Complemental strand, 11999841 - 11999770
Alignment:
| Q |
52 |
tgaggttaaagataggtgaaggaagagagattgaatggacaaaattacccttaatgtaattaattaaaaatg |
123 |
Q |
| |
|
|||||| ||||| || ||||||||||||| ||||| |||||||||||||| |||||||||||||||||||| |
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|
| T |
11999841 |
tgaggtcaaagacgggggaaggaagagagagtgaatagacaaaattaccctcaatgtaattaattaaaaatg |
11999770 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 66 - 129
Target Start/End: Complemental strand, 9618062 - 9617999
Alignment:
| Q |
66 |
ggtgaaggaagagagattgaatggacaaaattacccttaatgtaattaattaaaaatgccacat |
129 |
Q |
| |
|
||||||||||||||| | |||| |||| |||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
9618062 |
ggtgaaggaagagagttggaatagacagaattacccttaatgaaattaataaaaaatgccacat |
9617999 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 134
Target Start/End: Complemental strand, 31858953 - 31858909
Alignment:
| Q |
90 |
acaaaattacccttaatgtaattaattaaaaatgccacatggaag |
134 |
Q |
| |
|
||||||||||||||||| |||||||| || |||||||||| |||| |
|
|
| T |
31858953 |
acaaaattacccttaatataattaataaacaatgccacatagaag |
31858909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 66 - 129
Target Start/End: Complemental strand, 5830031 - 5829968
Alignment:
| Q |
66 |
ggtgaaggaagagagattgaatggacaaaattacccttaatgtaattaattaaaaatgccacat |
129 |
Q |
| |
|
||||||||||||||| | |||| |||| |||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
5830031 |
ggtgaaggaagagagttggaatagacagaattacccttaatgaaattaataaaaaatgccacat |
5829968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 66 - 129
Target Start/End: Complemental strand, 42434207 - 42434144
Alignment:
| Q |
66 |
ggtgaaggaagagagattgaatggacaaaattacccttaatgtaattaattaaaaatgccacat |
129 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||| || ||||||| ||||||||||||| |
|
|
| T |
42434207 |
ggtgaaggaagaaagtaggaatggacaaaattacccttactgaaattaataaaaaatgccacat |
42434144 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 84 - 143
Target Start/End: Complemental strand, 29300707 - 29300648
Alignment:
| Q |
84 |
gaatggacaaaattacccttaatgtaattaattaaaaatgccacatggaagtgtgtagaa |
143 |
Q |
| |
|
||||||| |||| |||||||||| ||||| |||||||||||||||||| | |||||||| |
|
|
| T |
29300707 |
gaatggataaaactacccttaataaaattatttaaaaatgccacatggaggggtgtagaa |
29300648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 129
Target Start/End: Complemental strand, 30961290 - 30961245
Alignment:
| Q |
84 |
gaatggacaaaattacccttaatgtaattaattaaaaatgccacat |
129 |
Q |
| |
|
|||| ||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
30961290 |
gaattgacaaaattacccttgataaaattaattaaaaatgccacat |
30961245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 129
Target Start/End: Original strand, 30129803 - 30129843
Alignment:
| Q |
89 |
gacaaaattacccttaatgtaattaattaaaaatgccacat |
129 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
30129803 |
gacaaaattacccttaataaaattaattaaaaatgccacat |
30129843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 129
Target Start/End: Original strand, 6310243 - 6310283
Alignment:
| Q |
89 |
gacaaaattacccttaatgtaattaattaaaaatgccacat |
129 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
6310243 |
gacaaaattacccttaataaaattaattaaaaatgccacat |
6310283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 82 - 129
Target Start/End: Complemental strand, 1034552 - 1034505
Alignment:
| Q |
82 |
ttgaatggacaaaattacccttaatgtaattaattaaaaatgccacat |
129 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
1034552 |
ttgaatggacaaaattacccttaaaaaaaataattaaaaatgccacat |
1034505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 129
Target Start/End: Complemental strand, 19877018 - 19876973
Alignment:
| Q |
84 |
gaatggacaaaattacccttaatgtaattaattaaaaatgccacat |
129 |
Q |
| |
|
|||||||||||| || ||||||| ||||||||||||||||||||| |
|
|
| T |
19877018 |
gaatggacaaaactatccttaataaaattaattaaaaatgccacat |
19876973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 129
Target Start/End: Complemental strand, 49822339 - 49822294
Alignment:
| Q |
84 |
gaatggacaaaattacccttaatgtaattaattaaaaatgccacat |
129 |
Q |
| |
|
|||||||||||| || ||||||| ||||||||||||||||||||| |
|
|
| T |
49822339 |
gaatggacaaaactatccttaataaaattaattaaaaatgccacat |
49822294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 129
Target Start/End: Complemental strand, 4120825 - 4120779
Alignment:
| Q |
83 |
tgaatggacaaaattacccttaatgtaattaattaaaaatgccacat |
129 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||| |||||| |||||| |
|
|
| T |
4120825 |
tgaattgacaaaattacccttaatgaaattaataaaaaataccacat |
4120779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 129
Target Start/End: Original strand, 748159 - 748204
Alignment:
| Q |
84 |
gaatggacaaaattacccttaatgtaattaattaaaaatgccacat |
129 |
Q |
| |
|
|||| ||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
748159 |
gaattgacaaaattacccttgataaaattaattaaaaatgccacat |
748204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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