View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4051_high_30 (Length: 231)
Name: NF4051_high_30
Description: NF4051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4051_high_30 |
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Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 16 - 216
Target Start/End: Complemental strand, 10967007 - 10966807
Alignment:
| Q |
16 |
gtgagtgaaatagtgatatatgcatgcatatacaatgaataaggacataataaattatgaaacaaaaaggtacatgcataccctggatagtaaggggtag |
115 |
Q |
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| T |
10967007 |
gtgagtgaaatagtgatatatgcatgcatatacaatgaataaggacataataaattatgaaacaaaaaggtacatgcataccctggatagtaaggggtag |
10966908 |
T |
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| Q |
116 |
gaactagaaaagcatctcctggatcagccaaacaaaacatgattaattcgtttgcccctgttgcccctccactcatcaatatacggtttggatcaaatct |
215 |
Q |
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| T |
10966907 |
gaactagaaaagcatctcctggatcagccaaacaaaacatgattaattcgtttgcccctgttgcccctccactcatcaatatacggtttggatcaaatct |
10966808 |
T |
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| Q |
216 |
c |
216 |
Q |
| |
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| T |
10966807 |
c |
10966807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 152
Target Start/End: Original strand, 41421169 - 41421229
Alignment:
| Q |
92 |
cataccctggatagtaaggggtaggaactagaaaagcatctcctggatcagccaaacaaaa |
152 |
Q |
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| T |
41421169 |
cataccctggatagtaaggtgtaggcaccaaaaaagcatcaccaggatctgccaaacaaaa |
41421229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 134
Target Start/End: Original strand, 42790107 - 42790147
Alignment:
| Q |
94 |
taccctggatagtaaggggtaggaactagaaaagcatctcc |
134 |
Q |
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| T |
42790107 |
taccctggatagtaaggggtgggaacaagcaaagcatctcc |
42790147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 134
Target Start/End: Original strand, 42799647 - 42799687
Alignment:
| Q |
94 |
taccctggatagtaaggggtaggaactagaaaagcatctcc |
134 |
Q |
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| T |
42799647 |
taccctggatagtaaggggtgggaacaagcaaagcatctcc |
42799687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 92 - 215
Target Start/End: Original strand, 29965742 - 29965865
Alignment:
| Q |
92 |
cataccctggatagtaaggggtaggaactagaaaagcatctcctggatcagccaaacaaaacatgattaattcgtttgcccctgttgcccctccactcat |
191 |
Q |
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| T |
29965742 |
catacgctggataataagggctaggaaccaaaaaagcatcaccaggatcagccaaacaaaacatgattaactcatttgctcctgttgctccaccactcat |
29965841 |
T |
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| Q |
192 |
caatatacggtttggatcaaatct |
215 |
Q |
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| T |
29965842 |
caatatacggtcaggatcaaatct |
29965865 |
T |
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