View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4051_high_4 (Length: 613)
Name: NF4051_high_4
Description: NF4051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4051_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 579; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 579; E-Value: 0
Query Start/End: Original strand, 1 - 603
Target Start/End: Complemental strand, 49584658 - 49584057
Alignment:
| Q |
1 |
aaataaaaaatctttcttgtaatgcaacatgtctagtttgtgggtgcatgagtgatgatgatgtttaatttgtttagatttctgaaattgtatttttgct |
100 |
Q |
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| T |
49584658 |
aaataaaaaatctttcttgtaatgtaacatgtctagttt-tgggtgcatgagtgatgatgatgtttaatttgtttagatttctgaaattgtatttttgct |
49584560 |
T |
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| Q |
101 |
gttgtaggacagtgagtgagtaagtgagcaaaatggcttcaaggtcatattccaacttgttagatcttacttcatgtggctcgccgtctttcggtcgcga |
200 |
Q |
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| T |
49584559 |
gttgtaggacagtgagtgagtgagtgagcaaaatggcttcaaggtcatattccaacttgttagatcttacttcatgtggctcgccgtctttcggtcgcga |
49584460 |
T |
|
| Q |
201 |
aaagaaaaggcttcctagagtggcaactgttgctggagtgctatctgaattagatgatgaaaccaacaacagtgttggttctgatgctccttcctccatt |
300 |
Q |
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| T |
49584459 |
aaagaaaaggcttcctagagttgcaactgttgctggagtgctatctgaattagatgatgaaaccaacaacagtgttggttctgatgctccttcctccatt |
49584360 |
T |
|
| Q |
301 |
tctcaagagaggatgatcattgttggtaaccagcttccattgaaggcacaaaggaaagaggagaatggtaagtgggaattcacttgggatgaggattcac |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49584359 |
tctcaagagaggatgatcattgttggtaaccagcttccattgaaggcacaaaggaaagaggagaatggtaagtgggaattcacttgggatgaggattcac |
49584260 |
T |
|
| Q |
401 |
ttcttttacagctgaaagatggtcttggtgatgatgttgaaacaatctatattggttgtcttaaagaagaaattgatccaattgagcaagatgatgttgc |
500 |
Q |
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| T |
49584259 |
ttcttttacagctgaaagatggtcttggtgatgatgttgaaacaatctatattggttgtcttaaagaagaaattgatccaattgagcaagatgatgttgc |
49584160 |
T |
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| Q |
501 |
tcagttcttgcttgacaatttcaaatgtgtaccaactttccttccacctgaacttttcactaaattctatcatggtttctgtaaacaacatctatggcct |
600 |
Q |
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| T |
49584159 |
tcagtacttgcttgacaatttcaaatgtgtaccaactttccttccacctgaacttttcactaaattctatcatggtttctgtaaacaacatctatggcct |
49584060 |
T |
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| Q |
601 |
ttg |
603 |
Q |
| |
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||| |
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| T |
49584059 |
ttg |
49584057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 511 - 587
Target Start/End: Complemental strand, 11698415 - 11698339
Alignment:
| Q |
511 |
cttgacaatttcaaatgtgtaccaactttccttccacctgaacttttcactaaattctatcatggtttctgtaaaca |
587 |
Q |
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| T |
11698415 |
cttgagaatttcaaatgtgtccctacttttcttccacctgaaatgtttaccaagtactatcatggtttttgcaaaca |
11698339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 138 - 182
Target Start/End: Original strand, 6935841 - 6935885
Alignment:
| Q |
138 |
ttcaaggtcatattccaacttgttagatcttacttcatgtggctc |
182 |
Q |
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|||||| |||||||| ||||||||||||||||||||||||||||| |
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| T |
6935841 |
ttcaagatcatattctaacttgttagatcttacttcatgtggctc |
6935885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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