View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4051_high_7 (Length: 480)
Name: NF4051_high_7
Description: NF4051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4051_high_7 |
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Alignment Details
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 80 - 314
Target Start/End: Complemental strand, 3949238 - 3949005
Alignment:
| Q |
80 |
actgcaactgatatatttctgaagttcgcctgcaaaaattgcaattttcaaatatcaacaaccaatgaaaaaagtaggatcttttttctaatttacacac |
179 |
Q |
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| T |
3949238 |
actgcaactgatatatttctgaagttcgcctgcaaaaattgcatttttcaaatatcaacaaccaataaaaaaagtaggattttttttctaatttacacac |
3949139 |
T |
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| Q |
180 |
caacatgaatagttaagttttgtttattattctttcaattttacatcattgaaacatgatatatactaatttatatttgctctaagcagtgtcgtattaa |
279 |
Q |
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| T |
3949138 |
caacatgaatagttaagttttgtttactattctttcaattttacatcattgaaacatgatatatactaatttata-ttgctctaagcagtgtcgtattaa |
3949040 |
T |
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| Q |
280 |
aatcatattggcttggtgcaaactatatagatttt |
314 |
Q |
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| T |
3949039 |
aatcatattggcttggtgcaaactatatatatttt |
3949005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 3949320 - 3949259
Alignment:
| Q |
19 |
actattatcatcatgactattagttttcgctattcctattcaaataacaattcgagtagtta |
80 |
Q |
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| T |
3949320 |
actattatcatcataactattagttttcgctattcctattcaaatgccaattggagtagtta |
3949259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 336 - 383
Target Start/End: Complemental strand, 3948962 - 3948915
Alignment:
| Q |
336 |
atggtccaagcccactattaccaagtattgaccttaattaaatttccc |
383 |
Q |
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| T |
3948962 |
atggtccaatcccactattaccaagtattgaccttaattaaatttccc |
3948915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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