View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4051_high_9 (Length: 436)

Name: NF4051_high_9
Description: NF4051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4051_high_9
NF4051_high_9
[»] chr8 (1 HSPs)
chr8 (1-404)||(4359464-4359886)


Alignment Details
Target: chr8 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 404
Target Start/End: Original strand, 4359464 - 4359886
Alignment:
Q  1 ttaagagttaagaggttgtagttgaatctcacgtgagattgtgtagtctaaatgaaaatgtcacgtgactttaaaaaatcatggacgta----------- 89  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||               
T  4359464 ttaagagttaagaggttgtagttgaatctcacgtgagattgtgtagtttaaatgaaaatgtcacgtgactataaaaaatcatggacgtattgtaagaaaa 4359563  T
Q  90 ---aaattaggtgcatgtattcctta--aa---tttttcctatggttctaaactaaattactcaattttttgtaactattgaagatgtatttttagttaa 181  Q
       |||||||||||||| |||||||   ||   ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4359564 aaaaaattaggtgcatgcattcctttttaagtgttttttctatggttttaaactaaattactcaattttttgtaactattgaagatgtatttttagttaa 4359663  T
Q  182 aaatcttaggaaaagtcgatnnnnnnntgcacctatattttgtacattttataatactccttttttcaaatcgtgtaatgtaataatcaaaataaatata 281  Q
    ||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4359664 aaatcttaggaaaagtcgataaaaaaatgcacctatattttgtacattttataatactccttttttcaaatcgtgtaatgtaataatcaaaataaatata 4359763  T
Q  282 gtttgaaaataattattatgatgttcaatgccatgcttataatgcaaacagaaaattaatctaaatgattgaaactaatatttcgacattccaatataca 381  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4359764 gtttgaaaataattattatgaagttcaatgccatgcttataatgcaaacagaaaattaatctaaatgattgaaactaatatttcgacattccaatataca 4359863  T
Q  382 ataatgtaaataaaataaaatga 404  Q
    |||||||||||||||||||||||    
T  4359864 ataatgtaaataaaataaaatga 4359886  T

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