View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4051_low_15 (Length: 345)

Name: NF4051_low_15
Description: NF4051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4051_low_15
NF4051_low_15
[»] chr1 (3 HSPs)
chr1 (10-157)||(49584596-49584744)
chr1 (266-329)||(49584892-49584955)
chr1 (165-204)||(49584791-49584830)


Alignment Details
Target: chr1 (Bit Score: 68; Significance: 3e-30; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 10 - 157
Target Start/End: Original strand, 49584596 - 49584744
Alignment:
Q  10 acatcatcatcactcatgcacccaaaaactagacatgttacattacaagaaaga--nnnnnnnnnnnnngttataaacattacaaaaaatatccatnnnn 107  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||               |||||||||||||||||||||||||||        
T  49584596 acatcatcatcactcatgcacccaaaa-ctagacatgttacattacaagaaagattttttattttttttgttataaacattacaaaaaatatccataaaa 49584694  T
Q  108 nnnngttgcatggaaaatcaaattagacccatatgagaaattttacttag 157  Q
        ||||||||||||||||||||||||||||||||||||||||||||||    
T  49584695 aaaagttgcatggaaaatcaaattagacccatatgagaaattttacttag 49584744  T

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Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 266 - 329
Target Start/End: Original strand, 49584892 - 49584955
Alignment:
Q  266 caccaagtaattaacactgaattggggcaatgtttaagggagagttgaaaatgaatgaataata 329  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  49584892 caccaagtaattaacactgaattggggcaacgtttaagggagagttgaaaatgaatgaataata 49584955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 165 - 204
Target Start/End: Original strand, 49584791 - 49584830
Alignment:
Q  165 cagatttaacaatttgacagaatctaagatagatcatttg 204  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  49584791 cagatttaacaatttgacagaatctaacatagatcatttg 49584830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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