View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4051_low_16 (Length: 330)
Name: NF4051_low_16
Description: NF4051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4051_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 16 - 319
Target Start/End: Original strand, 13354277 - 13354580
Alignment:
| Q |
16 |
cctacaataccacaatgtcaaatcacaatcatcgtggcaatcacgacaagtaccacgatcagaaaccgttgctttcagcataacggaattcgagaaagaa |
115 |
Q |
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| T |
13354277 |
cctacaataccacaatatcaaatcacaatcatcatggcaatcacgacaagtaccacgatcagaaaccgttgctttcagcataacggaattcgagaaagaa |
13354376 |
T |
|
| Q |
116 |
aatcccgacatatttttaaggggtgacacctcaatctccgacggcattttaagactaacaaaaaccgaccaatctggtaaaccactccctaataccgttg |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
13354377 |
aatcccgacatatttttaaggggtgacacctcaatctccgacggcattttaagactaacaaaaactgaccaatctggtaaaccactccctaataccgttg |
13354476 |
T |
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| Q |
216 |
gacgtgcgacatacctcacgccaattcatatttgggataaaactagtggagaactagctgatttctccactagtttctcctttatcgtgaacacaaacgg |
315 |
Q |
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| T |
13354477 |
gacgtgcgacatacctcacgccaattcatatttgggataaaactagtggagaactagctgatttctccactagtttctcctttatcgtgaacacaaacga |
13354576 |
T |
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| Q |
316 |
ttca |
319 |
Q |
| |
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|||| |
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| T |
13354577 |
ttca |
13354580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 80 - 319
Target Start/End: Original strand, 13345644 - 13345883
Alignment:
| Q |
80 |
accgttgctttcagcataacggaattcgagaaagaaaatcccgacatatttttaaggggtgacacctcaatctccgacggcattttaagactaacaaaaa |
179 |
Q |
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| T |
13345644 |
accgtttctttcaccatattagaattcgagaaagaaaatccagacatatttctcaggggagatgcctcaatctctggtggcattttaagactgacaaaaa |
13345743 |
T |
|
| Q |
180 |
ccgaccaatctggtaaaccactccctaataccgttggacgtgcgacatacctcacgccaattcatatttgggataaaactagtggagaactagctgattt |
279 |
Q |
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| T |
13345744 |
ccgaccagtccggtgaaccaatccaaaagagtgttggtagagcaacacatctcacaccaattcacatttgggataaaactagtggaaaactagcagattt |
13345843 |
T |
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| Q |
280 |
ctccactagtttctcctttatcgtgaacacaaacggttca |
319 |
Q |
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| T |
13345844 |
ctccactcgtttcttctttttcgtgaacacaaatggttca |
13345883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 113 - 319
Target Start/End: Original strand, 13336535 - 13336744
Alignment:
| Q |
113 |
gaaaatcccgacatatttttaaggggtgacacctcaatctccgacggcattttaagactaacaaaaaccgaccaat---ctggtaaaccactccctaata |
209 |
Q |
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|||| |||| |||||||| | | ||| || ||||||||||| | ||| || | || ||||||||||||||| ||| ||||||||||||||| || | |
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| T |
13336535 |
gaaagtcccaacatatttgtcaagggagatacctcaatctctaatggcgttcttagcctaacaaaaaccgacaaatattctggtaaaccactccaaaaaa |
13336634 |
T |
|
| Q |
210 |
ccgttggacgtgcgacatacctcacgccaattcatatttgggataaaactagtggagaactagctgatttctccactagtttctcctttatcgtgaacac |
309 |
Q |
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| T |
13336635 |
gtgttggacacgcaacacatctcactccgattcacatttgggatgaaaccagtggagaattggcagatttctccactagtttctcctttatcgtgaacac |
13336734 |
T |
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| Q |
310 |
aaacggttca |
319 |
Q |
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|||||||||| |
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| T |
13336735 |
aaacggttca |
13336744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 170 - 319
Target Start/End: Original strand, 13339930 - 13340082
Alignment:
| Q |
170 |
ctaacaaaaaccgaccaat---ctggtaaaccactccctaataccgttggacgtgcgacatacctcacgccaattcatatttgggataaaactagtggag |
266 |
Q |
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||||||||||||||| ||| ||||||||||||||| || | |||||||| || ||| | ||||| || ||||| ||||||||| |||| ||||||| |
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| T |
13339930 |
ctaacaaaaaccgacaaatattctggtaaaccactccaaaaaagtgttggacgcgcaacacatctcactccgattcacatttgggatgaaaccagtggag |
13340029 |
T |
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| Q |
267 |
aactagctgatttctccactagtttctcctttatcgtgaacacaaacggttca |
319 |
Q |
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|| | || |||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
13340030 |
aattggcagatttctccactagtttctcttttatcgtgaacacaaacggttca |
13340082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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