View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4051_low_20 (Length: 319)
Name: NF4051_low_20
Description: NF4051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4051_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 10 - 303
Target Start/End: Complemental strand, 31049911 - 31049615
Alignment:
| Q |
10 |
tgttgatatattaaggagattg------ttttttgtttcagcctgatgtaactgcgccgggtgtgaacatacttgctgcctattcattgtttgcaagtgt |
103 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31049911 |
tgttgatatattaaggagattgcttttgttttttgtttcagcctgatgtaactgcgccgggtgtgaacatacttgctgcctattcattgtttgcaagtgt |
31049812 |
T |
|
| Q |
104 |
gtctaatttagtaacagacaatcgtcgaggttttccattcaatatacaacaaggaacttctatgtcttgtcctcatgttgctggcactgctggacttatc |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31049811 |
gtctaatttagtaacagacaatcgtcgaggttttccattcaatatacaacaaggaacttctatgtcttgtcctcatgttgctggcactgctggacttatc |
31049712 |
T |
|
| Q |
204 |
aaaacacttcatcctaattggagtccagcagctattaaatcagctattatgaccactggtattttctctcaccacacacaaatattataggaatgcatgt |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
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| T |
31049711 |
aaaacacttcatcctaattggagtccagcagctattaaatcagctattatgaccacaggtattttctctcaccacac---aatattataggaatgcatgt |
31049615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 10 - 273
Target Start/End: Complemental strand, 31162807 - 31162538
Alignment:
| Q |
10 |
tgttgatatattaaggagattg------ttttttgtttcagcctgatgtaactgcgccgggtgtgaacatacttgctgcctattcattgtttgcaagtgt |
103 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
31162807 |
tgttgatatattaaggagattgcttttgttttttgtttcagcctgatgtaactgcgccgggtgtgaacatacttgctgcctattcattgcttgcaagtgt |
31162708 |
T |
|
| Q |
104 |
gtctaatttagtaacagacaatcgtcgaggttttccattcaatatacaacaaggaacttctatgtcttgtcctcatgttgctggcactgctggacttatc |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31162707 |
gtctaatttagtaacagacaatcgtcgaggttttccattcaatatacaacaaggaacttctatgtcttgtcctcatgttgctggcactgctggacttatc |
31162608 |
T |
|
| Q |
204 |
aaaacacttcatcctaattggagtccagcagctattaaatcagctattatgaccactggtattttctctc |
273 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |
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| T |
31162607 |
aaaacacttcatcctaattggagtccagcagctattaaatcagctatcatgaccactggtattttttctc |
31162538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 29 - 273
Target Start/End: Complemental strand, 31144958 - 31144714
Alignment:
| Q |
29 |
ttgttttttgtttcagcctgatgtaactgcgccgggtgtgaacatacttgctgcctattcattgtttgcaagtgtgtctaatttagtaacagacaatcgt |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
31144958 |
ttgttttttgtttcagcctgatgtaactgcgccgggtgtgaacatacttgctgcctattcattgcttgcaagtgtgtctaatttagtaacagacaatcgt |
31144859 |
T |
|
| Q |
129 |
cgaggttttccattcaatatacaacaaggaacttctatgtcttgtcctcatgttgctggcactgctggacttatcaaaacacttcatcctaattggagtc |
228 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31144858 |
cgaggttttccattcaatatacaacaaggaacttctatgtcttgtcctcatgttgttggcactgctggacttatcaaaacacttcatcctaattggagtc |
31144759 |
T |
|
| Q |
229 |
cagcagctattaaatcagctattatgaccactggtattttctctc |
273 |
Q |
| |
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| |||||||||||||||||||| ||||||||||||||||| |||| |
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|
| T |
31144758 |
ctgcagctattaaatcagctatcatgaccactggtattttttctc |
31144714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 29 - 273
Target Start/End: Complemental strand, 31062209 - 31061965
Alignment:
| Q |
29 |
ttgttttttgtttcagcctgatgtaactgcgccgggtgtgaacatacttgctgcctattcattgtttgcaagtgtgtctaatttagtaacagacaatcgt |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||| |
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|
| T |
31062209 |
ttgttttttgtttcagcctgatgtaactgcacctggtgtgaacatacttgctgcctattcattgtttgctagtgcatctaatttactaacagacaatcgc |
31062110 |
T |
|
| Q |
129 |
cgaggttttccattcaatatacaacaaggaacttctatgtcttgtcctcatgttgctggcactgctggacttatcaaaacacttcatcctaattggagtc |
228 |
Q |
| |
|
||||||||||| |||||| || |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31062109 |
cgaggttttcccttcaatgtaatgcaaggaacttctatgtcttgccctcatgttgctgggactgctggacttatcaaaacacttcatcctaattggagtc |
31062010 |
T |
|
| Q |
229 |
cagcagctattaaatcagctattatgaccactggtattttctctc |
273 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
31062009 |
cagcagctattaaatcagctattatgaccactggtatttcctctc |
31061965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 32 - 273
Target Start/End: Complemental strand, 31107377 - 31107136
Alignment:
| Q |
32 |
ttttttgtttcagcctgatgtaactgcgccgggtgtgaacatacttgctgcctattcattgtttgcaagtgtgtctaatttagtaacagacaatcgtcga |
131 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||| ||||||| |
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|
| T |
31107377 |
tttttcgtttcagcctgatgtaactgcgccaggtgtgaacatactcgctgcctattcattgtttgcaagtgcatctaatttaataacagacactcgtcga |
31107278 |
T |
|
| Q |
132 |
ggttttccattcaatatacaacaaggaacttctatgtcttgtcctcatgttgctggcactgctggacttatcaaaacacttcatcctaattggagtccag |
231 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||||||||| |||||||| |||||||||||| | ||||||||||||||||||||||||||||||| |
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|
| T |
31107277 |
ggttttccattcaatgtaatgcaaggaacttctatgtcttgtccacatgttgccggcactgctggattaatcaaaacacttcatcctaattggagtccag |
31107178 |
T |
|
| Q |
232 |
cagctattaaatcagctattatgaccactggtattttctctc |
273 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||||||||||| |
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|
| T |
31107177 |
cagctattaaatcggctataatgaccactggtattttctctc |
31107136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 29 - 264
Target Start/End: Original strand, 31202855 - 31203090
Alignment:
| Q |
29 |
ttgttttttgtttcagcctgatgtaactgcgccgggtgtgaacatacttgctgcctattcattgtttgcaagtgtgtctaatttagtaacagacaatcgt |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||| ||||||| ||||||||| |||||||||||| |
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|
| T |
31202855 |
ttgttttttgtttcagcctgatgtaactgcaccaggtgtgaacatacttgctgcctattcgttgtacgcaagtgcatctaatttaaaaacagacaatcgc |
31202954 |
T |
|
| Q |
129 |
cgaggttttccattcaatatacaacaaggaacttctatgtcttgtcctcatgttgctggcactgctggacttatcaaaacacttcatcctaattggagtc |
228 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||||||||| ||||||||||| |||| ||| ||||||||||||||| | |||||||||||||||| |
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|
| T |
31202955 |
aacaattttccattcaatgtactacaaggaacttctatgtcttgccctcatgttgccggcattgcgggacttatcaaaacattgcatcctaattggagtc |
31203054 |
T |
|
| Q |
229 |
cagcagctattaaatcagctattatgaccactggta |
264 |
Q |
| |
|
|||||||||||||||||||||| |||||||| |||| |
|
|
| T |
31203055 |
cagcagctattaaatcagctatcatgaccacaggta |
31203090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 8e-24; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 156 - 264
Target Start/End: Original strand, 42315247 - 42315355
Alignment:
| Q |
156 |
ggaacttctatgtcttgtcctcatgttgctggcactgctggacttatcaaaacacttcatcctaattggagtccagcagctattaaatcagctattatga |
255 |
Q |
| |
|
|||||||||||| | || |||||||| |||||| || || ||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |
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| T |
42315247 |
ggaacttctatggcatgccctcatgtgtctggcatagcaggccttctcaaaacacttcatcctaaatggagtccagcagctatcaaatcagctattatga |
42315346 |
T |
|
| Q |
256 |
ccactggta |
264 |
Q |
| |
|
|||| |||| |
|
|
| T |
42315347 |
ccacgggta |
42315355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 150 - 265
Target Start/End: Complemental strand, 37016469 - 37016354
Alignment:
| Q |
150 |
caacaaggaacttctatgtcttgtcctcatgttgctggcactgctggacttatcaaaacacttcatcctaattggagtccagcagctattaaatcagcta |
249 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| || || ||| |||| ||||||||||||| |||||||||||| || || ||||| || | |
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|
| T |
37016469 |
caacaaggaacttcaatgtcttgtcctcatgttgctggcattgtcggtcttctcaagacacttcatcctagttggagtccagctgccatcaaatctgcca |
37016370 |
T |
|
| Q |
250 |
ttatgaccactggtat |
265 |
Q |
| |
|
| ||||| || ||||| |
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|
| T |
37016369 |
tcatgactaccggtat |
37016354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 155 - 256
Target Start/End: Original strand, 24268665 - 24268766
Alignment:
| Q |
155 |
aggaacttctatgtcttgtcctcatgttgctggcactgctggacttatcaaaacacttcatcctaattggagtccagcagctattaaatcagctattatg |
254 |
Q |
| |
|
|||||||||||| || || ||||||||| ||| || || || ||| |||||||| || |||||||||||||||| |||||| ||||||| ||||| ||| |
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|
| T |
24268665 |
aggaacttctatatcatgccctcatgtttctgccattgttgctcttctcaaaacaatttatcctaattggagtcctgcagcttttaaatctgctatcatg |
24268764 |
T |
|
| Q |
255 |
ac |
256 |
Q |
| |
|
|| |
|
|
| T |
24268765 |
ac |
24268766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 220 - 261
Target Start/End: Complemental strand, 8132938 - 8132897
Alignment:
| Q |
220 |
attggagtccagcagctattaaatcagctattatgaccactg |
261 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
8132938 |
attggagtccagcagctattaaatcagctcttatgacaactg |
8132897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 264
Target Start/End: Complemental strand, 42768238 - 42768148
Alignment:
| Q |
174 |
cctcatgttgctggcactgctggacttatcaaaacacttcatcctaattggagtccagcagctattaaatcagctattatgaccactggta |
264 |
Q |
| |
|
||||||||| |||||| || ||| | |||||| | ||||||||| ||||||||||||| |||||||| || || || |||||||| |||| |
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|
| T |
42768238 |
cctcatgtttctggcattgttggtataatcaaatctcttcatcctgattggagtccagctgctattaagtccgcgatcatgaccacaggta |
42768148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 264
Target Start/End: Original strand, 42736246 - 42736299
Alignment:
| Q |
211 |
ttcatcctaattggagtccagcagctattaaatcagctattatgaccactggta |
264 |
Q |
| |
|
|||||||| ||||||||||||||||||| || ||||| || |||||||| |||| |
|
|
| T |
42736246 |
ttcatcctgattggagtccagcagctatcaagtcagcaatcatgaccacaggta |
42736299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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