View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4051_low_21 (Length: 311)

Name: NF4051_low_21
Description: NF4051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4051_low_21
NF4051_low_21
[»] chr5 (12 HSPs)
chr5 (20-302)||(33821520-33821802)
chr5 (97-301)||(33734191-33734395)
chr5 (111-194)||(33762760-33762843)
chr5 (97-185)||(33748779-33748867)
chr5 (97-185)||(33834899-33834987)
chr5 (110-194)||(33904390-33904474)
chr5 (108-193)||(33679811-33679896)
chr5 (108-194)||(33865881-33865967)
chr5 (108-187)||(33698534-33698613)
chr5 (249-299)||(33748665-33748715)
chr5 (249-299)||(33834785-33834835)
chr5 (238-299)||(33762658-33762719)
[»] scaffold0023 (1 HSPs)
scaffold0023 (102-206)||(114199-114303)
[»] scaffold0247 (2 HSPs)
scaffold0247 (98-197)||(22142-22241)
scaffold0247 (240-284)||(22284-22328)
[»] scaffold0193 (1 HSPs)
scaffold0193 (98-185)||(25206-25293)
[»] chr8 (2 HSPs)
chr8 (107-185)||(21305875-21305953)
chr8 (233-299)||(21305761-21305827)
[»] chr7 (2 HSPs)
chr7 (110-196)||(5471194-5471280)
chr7 (239-302)||(5471317-5471380)
[»] scaffold0001 (1 HSPs)
scaffold0001 (110-196)||(148773-148859)


Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 20 - 302
Target Start/End: Complemental strand, 33821802 - 33821520
Alignment:
Q  20 ccaattagggcaatgcatgtagcctagctagaattaagtatgatgtattttttagataacattttagctaatgtatttatacatataatatagatggtca 119  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33821802 ccaattagggaaatgcatgtagcctagctagaattaagtatgatgtattctttagataacattttagctaatgtatttatacatataatatagatggtca 33821703  T
Q  120 ttgattgctgcaaggcttcctagtagaacagctaatgatgtgaaaaactattggaacacacatttgcggaagaaggttctttcagaatcagtagnnnnnn 219  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  33821702 ttgattgctgcaaggcttcctagtagaacggctaatgatgtgaaaaactattggaacacacatttgcggaagaaggttctttcagaatcagtagaaaaaa 33821603  T
Q  220 nnnnnnnngagagacctgaggaaacaatgaaagctcatgaagttattaaacctcgacctataactctttcaactcattcatct 302  Q
            ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  33821602 atgaaaaagagagacctaaggaaacaatgaaagctcatgaagttattatacctcgacctataactctttcaactcattcatct 33821520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 97 - 301
Target Start/End: Complemental strand, 33734395 - 33734191
Alignment:
Q  97 tatacatataatatagatggtcattgattgctgcaaggcttcctagtagaacagctaatgatgtgaaaaactattggaacacacatttgcggaagaaggt 196  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||    
T  33734395 tatacatataatatagatggtcattgattgctgcaaggcttcctggtagaactgctaatgatgtgaaaaacttttggcacacacatttgcggaagaaggt 33734296  T
Q  197 tctttcagaatcagtagnnnnnnnnnnnnnngagagacctgaggaaacaatgaaagctcatgaagttattaaacctcgacctataactctttcaactcat 296  Q
    | |||||||| ||  ||              |||| |||| |||||||||||||||||||||||||||||||||| | ||||  || | |||||||||||    
T  33734295 tgtttcagaaacaaaagaaaagaaagaaaaagagaaacctaaggaaacaatgaaagctcatgaagttattaaaccccaacctcgaattttttcaactcat 33734196  T
Q  297 tcatc 301  Q
    |||||    
T  33734195 tcatc 33734191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 111 - 194
Target Start/End: Complemental strand, 33762843 - 33762760
Alignment:
Q  111 agatggtcattgattgctgcaaggcttcctagtagaacagctaatgatgtgaaaaactattggaacacacatttgcggaagaag 194  Q
    |||||||||||||||||||||||||||||  |||||||||| ||||||||||||||||||||| ||||| ||||||||||||||    
T  33762843 agatggtcattgattgctgcaaggcttcccggtagaacagcgaatgatgtgaaaaactattggcacacaaatttgcggaagaag 33762760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 97 - 185
Target Start/End: Complemental strand, 33748867 - 33748779
Alignment:
Q  97 tatacatataatatagatggtcattgattgctgcaaggcttcctagtagaacagctaatgatgtgaaaaactattggaacacacatttg 185  Q
    |||||||||||||||||||| | |||||||||||||| ||||   ||||||||||||||||||||||||||||||||||||| ||||||    
T  33748867 tatacatataatatagatggacgttgattgctgcaagacttcaaggtagaacagctaatgatgtgaaaaactattggaacactcatttg 33748779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 97 - 185
Target Start/End: Complemental strand, 33834987 - 33834899
Alignment:
Q  97 tatacatataatatagatggtcattgattgctgcaaggcttcctagtagaacagctaatgatgtgaaaaactattggaacacacatttg 185  Q
    |||||||||||||||||||| | |||||||||||||| ||||   ||||||||||||||||||||||||||||||||||||| ||||||    
T  33834987 tatacatataatatagatggacgttgattgctgcaagacttcaaggtagaacagctaatgatgtgaaaaactattggaacactcatttg 33834899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 110 - 194
Target Start/End: Complemental strand, 33904474 - 33904390
Alignment:
Q  110 tagatggtcattgattgctgcaaggcttcctagtagaacagctaatgatgtgaaaaactattggaacacacatttgcggaagaag 194  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||||||||| || |||||| ||||||||||| | ||||||    
T  33904474 tagatggtcattgattgctgcaaggcttccgggtagaacagctaatgatgtgaagaattattggcacacacatttgagaaagaag 33904390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 108 - 193
Target Start/End: Complemental strand, 33679896 - 33679811
Alignment:
Q  108 tatagatggtcattgattgctgcaaggcttcctagtagaacagctaatgatgtgaaaaactattggaacacacatttgcggaagaa 193  Q
    ||||||||||||||||||||||| ||||||||  |||||||||||||||||||||| || |||||| ||||| ||||||| |||||    
T  33679896 tatagatggtcattgattgctgcgaggcttccgggtagaacagctaatgatgtgaagaattattggcacacaaatttgcgcaagaa 33679811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 108 - 194
Target Start/End: Complemental strand, 33865967 - 33865881
Alignment:
Q  108 tatagatggtcattgattgctgcaaggcttcctagtagaacagctaatgatgtgaaaaactattggaacacacatttgcggaagaag 194  Q
    |||||||||||||||||||||||||| || ||  |||||||||||||||||||||| || |||||| |||||||||| || ||||||    
T  33865967 tatagatggtcattgattgctgcaagactcccgggtagaacagctaatgatgtgaagaattattggcacacacatttacgcaagaag 33865881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 108 - 187
Target Start/End: Complemental strand, 33698613 - 33698534
Alignment:
Q  108 tatagatggtcattgattgctgcaaggcttcctagtagaacagctaatgatgtgaaaaactattggaacacacatttgcg 187  Q
    ||||||||||| ||||||||||||||||||||  |||| ||||||||||||||||| || |||||| ||||| |||||||    
T  33698613 tatagatggtctttgattgctgcaaggcttccgggtaggacagctaatgatgtgaagaattattggcacacaaatttgcg 33698534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 249 - 299
Target Start/End: Complemental strand, 33748715 - 33748665
Alignment:
Q  249 aaagctcatgaagttattaaacctcgacctataactctttcaactcattca 299  Q
    |||||||||||||||||||||||||| ||  ||||| ||||||||||||||    
T  33748715 aaagctcatgaagttattaaacctcgtccattaactttttcaactcattca 33748665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 299
Target Start/End: Complemental strand, 33834835 - 33834785
Alignment:
Q  249 aaagctcatgaagttattaaacctcgacctataactctttcaactcattca 299  Q
    ||||||||||||||||| |||||||| ||  ||||| ||||||||||||||    
T  33834835 aaagctcatgaagttatcaaacctcgtccattaactttttcaactcattca 33834785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 299
Target Start/End: Complemental strand, 33762719 - 33762658
Alignment:
Q  238 aggaaacaatgaaagctcatgaagttattaaacctcgacctataactctttcaactcattca 299  Q
    ||||||| |||||| | ||||||||||||||||||| ||||  || | ||||||||||||||    
T  33762719 aggaaactatgaaaacacatgaagttattaaacctcaacctcgaattttttcaactcattca 33762658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 102 - 206
Target Start/End: Original strand, 114199 - 114303
Alignment:
Q  102 atataatatagatggtcattgattgctgcaaggcttcctagtagaacagctaatgatgtgaaaaactattggaacacacatttgcggaagaaggttcttt 201  Q
    |||||||||||||||||||||||||| | |||||||||   |||||||||||||||||| |||||||||||| ||||||||||| ||||||||||| |||    
T  114199 atataatatagatggtcattgattgcgggaaggcttccggctagaacagctaatgatgtcaaaaactattggcacacacatttgaggaagaaggttgttt 114298  T
Q  202 cagaa 206  Q
     ||||    
T  114299 tagaa 114303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 98 - 197
Target Start/End: Original strand, 22142 - 22241
Alignment:
Q  98 atacatataatatagatggtcattgattgctgcaaggcttcctagtagaacagctaatgatgtgaaaaactattggaacacacatttgcggaagaaggtt 197  Q
    ||||||||  || ||||||||||||||||||| |||||||||  |||||||||||||||||||||||||||||||||| |||||||| || |||||||||    
T  22142 atacatatcgtacagatggtcattgattgctggaaggcttccaggtagaacagctaatgatgtgaaaaactattggaatacacatttacgaaagaaggtt 22241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 240 - 284
Target Start/End: Original strand, 22284 - 22328
Alignment:
Q  240 gaaacaatgaaagctcatgaagttattaaacctcgacctataact 284  Q
    |||||||||||||||||||| |||||||||||||| |||||||||    
T  22284 gaaacaatgaaagctcatgaggttattaaacctcggcctataact 22328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0193 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0193
Description:

Target: scaffold0193; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 98 - 185
Target Start/End: Original strand, 25206 - 25293
Alignment:
Q  98 atacatataatatagatggtcattgattgctgcaaggcttcctagtagaacagctaatgatgtgaaaaactattggaacacacatttg 185  Q
    ||||||||||||||||||| |||||||||||||||| ||||   ||||| ||||||||||||||||||||||||||||||| ||||||    
T  25206 atacatataatatagatggacattgattgctgcaagacttcagggtagatcagctaatgatgtgaaaaactattggaacacccatttg 25293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 107 - 185
Target Start/End: Complemental strand, 21305953 - 21305875
Alignment:
Q  107 atatagatggtcattgattgctgcaaggcttcctagtagaacagctaatgatgtgaaaaactattggaacacacatttg 185  Q
    ||||||||||||||||||||||| |||||||||  |||||||||||||||||||||| ||||||||| ||||| |||||    
T  21305953 atatagatggtcattgattgctggaaggcttccgggtagaacagctaatgatgtgaagaactattggcacacaaatttg 21305875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 233 - 299
Target Start/End: Complemental strand, 21305827 - 21305761
Alignment:
Q  233 acctgaggaaacaatgaaagctcatgaagttattaaacctcgacctataactctttcaactcattca 299  Q
    |||| ||||||| ||||||||||||||||||||||||||||| ||||||||| | |||| |||||||    
T  21305827 acctaaggaaaccatgaaagctcatgaagttattaaacctcgtcctataactttgtcaagtcattca 21305761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 110 - 196
Target Start/End: Original strand, 5471194 - 5471280
Alignment:
Q  110 tagatggtcattgattgctgcaaggcttcctagtagaacagctaatgatgtgaaaaactattggaacacacatttgcggaagaaggt 196  Q
    |||||||||||||||||||| |||||||||  ||||||||||||||  |||||||||||||||||||||||| |||  |||||||||    
T  5471194 tagatggtcattgattgctggaaggcttccgggtagaacagctaatagtgtgaaaaactattggaacacacacttgttgaagaaggt 5471280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 239 - 302
Target Start/End: Original strand, 5471317 - 5471380
Alignment:
Q  239 ggaaacaatgaaagctcatgaagttattaaacctcgacctataactctttcaactcattcatct 302  Q
    ||| ||||||||||||||  |||||||||||||| ||||||||||| |||||||||| ||||||    
T  5471317 ggagacaatgaaagctcaccaagttattaaacctagacctataactttttcaactcaatcatct 5471380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 110 - 196
Target Start/End: Complemental strand, 148859 - 148773
Alignment:
Q  110 tagatggtcattgattgctgcaaggcttcctagtagaacagctaatgatgtgaaaaactattggaacacacatttgcggaagaaggt 196  Q
    |||||||||||||||||||| |||||||||  | ||||||||||||||||| || ||||||||| ||||||| ||||  ||||||||    
T  148859 tagatggtcattgattgctggaaggcttccgggaagaacagctaatgatgtaaagaactattggcacacacacttgcacaagaaggt 148773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University