View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4051_low_22 (Length: 308)

Name: NF4051_low_22
Description: NF4051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4051_low_22
NF4051_low_22
[»] chr8 (6 HSPs)
chr8 (38-183)||(8750021-8750166)
chr8 (38-182)||(24963054-24963198)
chr8 (38-182)||(38112485-38112629)
chr8 (61-182)||(41648542-41648661)
chr8 (69-163)||(42787411-42787506)
chr8 (84-129)||(3776344-3776389)
[»] chr7 (2 HSPs)
chr7 (38-182)||(40404099-40404243)
chr7 (82-129)||(43353791-43353838)
[»] chr5 (4 HSPs)
chr5 (183-290)||(31961350-31961457)
chr5 (52-123)||(11999770-11999841)
chr5 (66-129)||(9617999-9618062)
chr5 (90-134)||(31858909-31858953)
[»] chr1 (4 HSPs)
chr1 (66-129)||(5829968-5830031)
chr1 (66-129)||(42434144-42434207)
chr1 (84-143)||(29300648-29300707)
chr1 (84-129)||(30961245-30961290)
[»] chr3 (1 HSPs)
chr3 (89-129)||(30129803-30129843)
[»] chr2 (1 HSPs)
chr2 (89-129)||(6310243-6310283)
[»] chr4 (3 HSPs)
chr4 (82-129)||(1034505-1034552)
chr4 (84-129)||(19876973-19877018)
chr4 (84-129)||(49822294-49822339)
[»] chr6 (2 HSPs)
chr6 (83-129)||(4120779-4120825)
chr6 (84-129)||(748159-748204)


Alignment Details
Target: chr8 (Bit Score: 138; Significance: 4e-72; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 38 - 183
Target Start/End: Original strand, 8750021 - 8750166
Alignment:
Q  38 tgaagaaagtcgcgtgaggttaaagataggtgaaggaagagagattgaatggacaaaattacccttaatgtaattaattaaaaatgccacatggaagtgt 137  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  8750021 tgaagaaagtcgcgtgaggttaaagataggtgaaggaagagagattgaatagacaaaattacccttaatgtaattaattaaaaatgccacatgggagtgt 8750120  T
Q  138 gtagaatggtgtgtgccaactatggaggtttgtgtatcatcactca 183  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  8750121 gtagaatggtgtgtgccaactatggaggtttgtgtatcatcactca 8750166  T

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Target: chr8; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 38 - 182
Target Start/End: Complemental strand, 24963198 - 24963054
Alignment:
Q  38 tgaagaaagtcgcgtgaggttaaagataggtgaaggaagagagattgaatggacaaaattacccttaatgtaattaattaaaaatgccacatggaagtgt 137  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  24963198 tgaagaaagtcgcgtgaggttaaagataggtgaaggaagagagattgaatggacaaaattacccttaatgtaattaattaaaaatgccacatgggagtgt 24963099  T
Q  138 gtagaatggtgtgtgccaactatggaggtttgtgtatcatcactc 182  Q
     ||||||||||||||||||||||||||||||||||||||||||||    
T  24963098 ttagaatggtgtgtgccaactatggaggtttgtgtatcatcactc 24963054  T

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Target: chr8; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 38 - 182
Target Start/End: Complemental strand, 38112629 - 38112485
Alignment:
Q  38 tgaagaaagtcgcgtgaggttaaagataggtgaaggaagagagattgaatggacaaaattacccttaatgtaattaattaaaaatgccacatggaagtgt 137  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||    
T  38112629 tgaagaaagtcgcgtgaggttaaagataggtgaaggaagagagattgaatggacaaaattacccttaatgtaattaattaaaaatgccacatgagagtgt 38112530  T
Q  138 gtagaatggtgtgtgccaactatggaggtttgtgtatcatcactc 182  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  38112529 gtagaatggtgtgtgccaactatggaggtttgtgtatcatcactc 38112485  T

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Target: chr8; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 61 - 182
Target Start/End: Original strand, 41648542 - 41648661
Alignment:
Q  61 agataggtgaaggaagagagattgaatggacaaaattacccttaatgtaattaattaaaaatgccacatggaagtgtgtagaatggtgtgtgccaactat 160  Q
    |||| |||||||||||||||  ||||||||||||||||||||||||  ||||| ||||||||||||||||| ||||||||||| | ||| |||||  |||    
T  41648542 agatgggtgaaggaagagag--tgaatggacaaaattacccttaataaaattatttaaaaatgccacatgggagtgtgtagaaggatgtatgccatgtat 41648639  T
Q  161 ggaggtttgtgtatcatcactc 182  Q
    ||| |||||| |||||||||||    
T  41648640 ggatgtttgtatatcatcactc 41648661  T

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Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 69 - 163
Target Start/End: Original strand, 42787411 - 42787506
Alignment:
Q  69 gaaggaagagagattgaatggacaaaattacccttaatgtaattaattaaaaatgccacatggaa-gtgtgtagaatggtgtgtgccaactatgga 163  Q
    ||||||||||| | |||||||||||||||||| | ||| ||||||||||||||||||||||| || |||||||||| ||| | ||||| |||||||    
T  42787411 gaaggaagagaaagtgaatggacaaaattaccttcaatataattaattaaaaatgccacatgaaaggtgtgtagaagggtctatgccacctatgga 42787506  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 129
Target Start/End: Complemental strand, 3776389 - 3776344
Alignment:
Q  84 gaatggacaaaattacccttaatgtaattaattaaaaatgccacat 129  Q
    |||| |||||||||||||||| || ||||||| |||||||||||||    
T  3776389 gaattgacaaaattacccttactgaaattaataaaaaatgccacat 3776344  T

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Target: chr7 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 38 - 182
Target Start/End: Original strand, 40404099 - 40404243
Alignment:
Q  38 tgaagaaagtcgcgtgaggttaaagataggtgaaggaagagagattgaatggacaaaattacccttaatgtaattaattaaaaatgccacatggaagtgt 137  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  40404099 tgaagaaagtcgcgtgaggttaaagataggtgaaggaagagagattgaattgacaaaattacccttaatgtaattaattaaaaatgccacatgggagtgt 40404198  T
Q  138 gtagaatggtgtgtgccaactatggaggtttgtgtatcatcactc 182  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  40404199 gtagaatggtgtgtgccaactatggaggtttgtgtatcatcactc 40404243  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 82 - 129
Target Start/End: Complemental strand, 43353838 - 43353791
Alignment:
Q  82 ttgaatggacaaaattacccttaatgtaattaattaaaaatgccacat 129  Q
    ||||||||||||||||||||||||   |||||||||||||||||||||    
T  43353838 ttgaatggacaaaattacccttaaaaaaattaattaaaaatgccacat 43353791  T

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Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 183 - 290
Target Start/End: Complemental strand, 31961457 - 31961350
Alignment:
Q  183 aagaaaaaggattagctcaagtagacatgatcatcttaagttttcatattccannnnnnngttcaaattgagagtaatgacacttcgatttcaccatgat 282  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||| |||||||||||||||||||||||||||||    
T  31961457 aagaaaaaggattagctcaagtagacatgatcatcttaagttttcatattccatttttttgttcaaattgtgagtaatgacacttcgatttcaccatgat 31961358  T
Q  283 tttttcat 290  Q
    ||||||||    
T  31961357 tttttcat 31961350  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 52 - 123
Target Start/End: Complemental strand, 11999841 - 11999770
Alignment:
Q  52 tgaggttaaagataggtgaaggaagagagattgaatggacaaaattacccttaatgtaattaattaaaaatg 123  Q
    |||||| |||||  || ||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||    
T  11999841 tgaggtcaaagacgggggaaggaagagagagtgaatagacaaaattaccctcaatgtaattaattaaaaatg 11999770  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 66 - 129
Target Start/End: Complemental strand, 9618062 - 9617999
Alignment:
Q  66 ggtgaaggaagagagattgaatggacaaaattacccttaatgtaattaattaaaaatgccacat 129  Q
    ||||||||||||||| | |||| |||| |||||||||||||| ||||||| |||||||||||||    
T  9618062 ggtgaaggaagagagttggaatagacagaattacccttaatgaaattaataaaaaatgccacat 9617999  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 134
Target Start/End: Complemental strand, 31858953 - 31858909
Alignment:
Q  90 acaaaattacccttaatgtaattaattaaaaatgccacatggaag 134  Q
    ||||||||||||||||| |||||||| || |||||||||| ||||    
T  31858953 acaaaattacccttaatataattaataaacaatgccacatagaag 31858909  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 66 - 129
Target Start/End: Complemental strand, 5830031 - 5829968
Alignment:
Q  66 ggtgaaggaagagagattgaatggacaaaattacccttaatgtaattaattaaaaatgccacat 129  Q
    ||||||||||||||| | |||| |||| |||||||||||||| ||||||| |||||||||||||    
T  5830031 ggtgaaggaagagagttggaatagacagaattacccttaatgaaattaataaaaaatgccacat 5829968  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 66 - 129
Target Start/End: Complemental strand, 42434207 - 42434144
Alignment:
Q  66 ggtgaaggaagagagattgaatggacaaaattacccttaatgtaattaattaaaaatgccacat 129  Q
    |||||||||||| ||   ||||||||||||||||||||| || ||||||| |||||||||||||    
T  42434207 ggtgaaggaagaaagtaggaatggacaaaattacccttactgaaattaataaaaaatgccacat 42434144  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 84 - 143
Target Start/End: Complemental strand, 29300707 - 29300648
Alignment:
Q  84 gaatggacaaaattacccttaatgtaattaattaaaaatgccacatggaagtgtgtagaa 143  Q
    ||||||| |||| ||||||||||  ||||| |||||||||||||||||| | ||||||||    
T  29300707 gaatggataaaactacccttaataaaattatttaaaaatgccacatggaggggtgtagaa 29300648  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 129
Target Start/End: Complemental strand, 30961290 - 30961245
Alignment:
Q  84 gaatggacaaaattacccttaatgtaattaattaaaaatgccacat 129  Q
    |||| ||||||||||||||| ||  |||||||||||||||||||||    
T  30961290 gaattgacaaaattacccttgataaaattaattaaaaatgccacat 30961245  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 129
Target Start/End: Original strand, 30129803 - 30129843
Alignment:
Q  89 gacaaaattacccttaatgtaattaattaaaaatgccacat 129  Q
    ||||||||||||||||||  |||||||||||||||||||||    
T  30129803 gacaaaattacccttaataaaattaattaaaaatgccacat 30129843  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 129
Target Start/End: Original strand, 6310243 - 6310283
Alignment:
Q  89 gacaaaattacccttaatgtaattaattaaaaatgccacat 129  Q
    ||||||||||||||||||  |||||||||||||||||||||    
T  6310243 gacaaaattacccttaataaaattaattaaaaatgccacat 6310283  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 82 - 129
Target Start/End: Complemental strand, 1034552 - 1034505
Alignment:
Q  82 ttgaatggacaaaattacccttaatgtaattaattaaaaatgccacat 129  Q
    ||||||||||||||||||||||||   || ||||||||||||||||||    
T  1034552 ttgaatggacaaaattacccttaaaaaaaataattaaaaatgccacat 1034505  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 129
Target Start/End: Complemental strand, 19877018 - 19876973
Alignment:
Q  84 gaatggacaaaattacccttaatgtaattaattaaaaatgccacat 129  Q
    |||||||||||| || |||||||  |||||||||||||||||||||    
T  19877018 gaatggacaaaactatccttaataaaattaattaaaaatgccacat 19876973  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 129
Target Start/End: Complemental strand, 49822339 - 49822294
Alignment:
Q  84 gaatggacaaaattacccttaatgtaattaattaaaaatgccacat 129  Q
    |||||||||||| || |||||||  |||||||||||||||||||||    
T  49822339 gaatggacaaaactatccttaataaaattaattaaaaatgccacat 49822294  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 129
Target Start/End: Complemental strand, 4120825 - 4120779
Alignment:
Q  83 tgaatggacaaaattacccttaatgtaattaattaaaaatgccacat 129  Q
    ||||| ||||||||||||||||||| ||||||| |||||| ||||||    
T  4120825 tgaattgacaaaattacccttaatgaaattaataaaaaataccacat 4120779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 129
Target Start/End: Original strand, 748159 - 748204
Alignment:
Q  84 gaatggacaaaattacccttaatgtaattaattaaaaatgccacat 129  Q
    |||| ||||||||||||||| ||  |||||||||||||||||||||    
T  748159 gaattgacaaaattacccttgataaaattaattaaaaatgccacat 748204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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